GenerateEnsemble #46
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| name: "GenerateEnsemble" | |
| on: | |
| workflow_dispatch: | |
| # scheduled run every Wednesday at 03.00 a.m. (Wednesday 02.00 a.m.UTC) | |
| # TODO for the time being upload is Thursday at 03.00 a.m. (Thursday 02.00 a.m. UTC) | |
| schedule: | |
| - cron: '00 02 * * 3' | |
| jobs: | |
| ensemble_job: | |
| if: github.repository_owner == 'Predizioni-Epidemiologiche-Italia' | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Checkout the python tools repo | |
| # ------------------------------------------- | |
| - name: checkout python tools repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'Predizioni-Epidemiologiche-Italia/hub-tools' | |
| ref: 'main' | |
| path: './tools/' | |
| # Checkout the data repository | |
| # ------------------------------------------- | |
| - name: checkout data repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'Predizioni-Epidemiologiche-Italia/Influcast' | |
| ref: 'main' | |
| path: './repo/' | |
| # Run Pyton code | |
| # ------------------------- | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - run: pip install pandas isoweek==1.3.3 | |
| - name: Pyhton | |
| id: compute_ensemble | |
| run: | | |
| python ./tools/code/compute_ensemble.py | |
| - name: Commit data repo changes | |
| uses: EndBug/add-and-commit@v7 | |
| with: | |
| cwd: './repo' | |
| message: "Update data storage" | |
| default_author: github_actions | |
| push: true | |
| # Save changes to artifact for later persisting | |
| - name: Save changes to artifact | |
| env: | |
| changed_files: ${{ steps.compute_ensemble.outputs.ensemble_file }} | |
| run: | | |
| echo "{ \"pr-changes\" : \"previsioni/Influcast-Ensemble/$changed_files\" }" > pr_changes.json | |
| - name: Upload changes | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pr_changes | |
| path: ./pr_changes.json | |