Update server URLs in code #116
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on: | ||
push: | ||
branches: | ||
- master | ||
- "*" | ||
pull_request: | ||
name: R-CMD-check | ||
jobs: | ||
R-CMD-check: | ||
runs-on: ${{ matrix.config.os }} | ||
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
config: | ||
- {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | ||
- {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
container: pecan/depends:develop | ||
services: | ||
postgres: | ||
image: mdillon/postgis:9.5 | ||
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | ||
api: | ||
image: pecan/api:develop | ||
env: | ||
PGHOST: postgres | ||
PECAN_VERSION: 1.7.0 | ||
PECAN_GIT_BRANCH: develop | ||
PECAN_GIT_CHECKSUM: unknown | ||
PECAN_GIT_DATE: unknown | ||
HOST_ONLY: FALSE | ||
AUTH_REQ: TRUE | ||
ports: | ||
- 8000:8000 | ||
env: | ||
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
RSPM: ${{ matrix.config.rspm }} | ||
NCPUS: 2 | ||
CI: true | ||
steps: | ||
- uses: actions/checkout@v2 | ||
#- name: install utils | ||
# run: apt-get update && apt-get install -y openssh-client postgresql-client curl | ||
- name: db setup | ||
uses: docker://pecan/db:latest | ||
- name: create account | ||
uses: docker://pecan/bety:latest | ||
args: user carya illinois "Carya Demo User" [email protected] 1 1 | ||
- uses: r-lib/actions/setup-r@master | ||
with: | ||
r-version: ${{ matrix.config.r }} | ||
- uses: r-lib/actions/setup-pandoc@master | ||
- name: Query dependencies | ||
run: | | ||
install.packages('remotes') | ||
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
shell: Rscript {0} | ||
- name: Cache R packages | ||
if: runner.os != 'Windows' | ||
uses: actions/cache@v1 | ||
with: | ||
path: ${{ env.R_LIBS_USER }} | ||
key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1- | ||
- name: Install system dependencies | ||
if: runner.os == 'Linux' | ||
env: | ||
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | ||
run: | | ||
Rscript -e "remotes::install_github('r-hub/sysreqs')" | ||
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | ||
sudo -s eval "$sysreqs" | ||
- name: Install dependencies | ||
run: | | ||
remotes::install_deps(dependencies = TRUE) | ||
remotes::install_cran("rcmdcheck") | ||
shell: Rscript {0} | ||
- name: Check | ||
env: | ||
_R_CHECK_CRAN_INCOMING_REMOTE_: false | ||
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
shell: Rscript {0} | ||
- name: Upload check results | ||
if: failure() | ||
uses: actions/upload-artifact@master | ||
with: | ||
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | ||
path: check |