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Update server URLs in code #116

Update server URLs in code

Update server URLs in code #116

Workflow file for this run

on:
push:
branches:
- master
- "*"
pull_request:
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
container: pecan/depends:develop
services:
postgres:
image: mdillon/postgis:9.5
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
api:
image: pecan/api:develop
env:
PGHOST: postgres
PECAN_VERSION: 1.7.0
PECAN_GIT_BRANCH: develop
PECAN_GIT_CHECKSUM: unknown
PECAN_GIT_DATE: unknown
HOST_ONLY: FALSE
AUTH_REQ: TRUE
ports:
- 8000:8000
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
NCPUS: 2
CI: true
steps:
- uses: actions/checkout@v2
#- name: install utils
# run: apt-get update && apt-get install -y openssh-client postgresql-client curl
- name: db setup
uses: docker://pecan/db:latest
- name: create account
uses: docker://pecan/bety:latest
args: user carya illinois "Carya Demo User" [email protected] 1 1

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GitHub Actions / R-CMD-check

Invalid workflow file

The workflow is not valid. .github/workflows/ci.yml (Line: 59, Col: 9): Unexpected value 'args'
- uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@master
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
shell: Rscript {0}
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1-
- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
shell: Rscript {0}
- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check