Update server URLs in code #116
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| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| - "*" | ||
| pull_request: | ||
| name: R-CMD-check | ||
| jobs: | ||
| R-CMD-check: | ||
| runs-on: ${{ matrix.config.os }} | ||
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | ||
| - {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
| container: pecan/depends:develop | ||
| services: | ||
| postgres: | ||
| image: mdillon/postgis:9.5 | ||
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | ||
| api: | ||
| image: pecan/api:develop | ||
| env: | ||
| PGHOST: postgres | ||
| PECAN_VERSION: 1.7.0 | ||
| PECAN_GIT_BRANCH: develop | ||
| PECAN_GIT_CHECKSUM: unknown | ||
| PECAN_GIT_DATE: unknown | ||
| HOST_ONLY: FALSE | ||
| AUTH_REQ: TRUE | ||
| ports: | ||
| - 8000:8000 | ||
| env: | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| RSPM: ${{ matrix.config.rspm }} | ||
| NCPUS: 2 | ||
| CI: true | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| #- name: install utils | ||
| # run: apt-get update && apt-get install -y openssh-client postgresql-client curl | ||
| - name: db setup | ||
| uses: docker://pecan/db:latest | ||
| - name: create account | ||
| uses: docker://pecan/bety:latest | ||
| args: user carya illinois "Carya Demo User" [email protected] 1 1 | ||
| - uses: r-lib/actions/setup-r@master | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
| - uses: r-lib/actions/setup-pandoc@master | ||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| shell: Rscript {0} | ||
| - name: Cache R packages | ||
| if: runner.os != 'Windows' | ||
| uses: actions/cache@v1 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1- | ||
| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| env: | ||
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | ||
| run: | | ||
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | ||
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | ||
| sudo -s eval "$sysreqs" | ||
| - name: Install dependencies | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("rcmdcheck") | ||
| shell: Rscript {0} | ||
| - name: Check | ||
| env: | ||
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | ||
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
| shell: Rscript {0} | ||
| - name: Upload check results | ||
| if: failure() | ||
| uses: actions/upload-artifact@master | ||
| with: | ||
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | ||
| path: check | ||
