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WIP: Check Github Action API rate limit #3209

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WIP: Check Github Action API rate limit #3209

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2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
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Expand Up @@ -131,7 +131,7 @@ jobs:

# run PEcAn checks
- name: check
run: make -j1 check_base
run: make -j1 install
env:
REBUILD_DOCS: "FALSE"
RUN_TESTS: "FALSE"
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23 changes: 18 additions & 5 deletions Makefile
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Expand Up @@ -10,6 +10,18 @@ MODULES := allometry assim.batch assim.sequential benchmark \
data.remote emulator meta.analysis \
photosynthesis priors rtm uncertainty


BASE_RUNIVERSE := PEcAn.logger PEcAn.utils PEcAn.DB PEcAn.settings PEcAn.visualization PEcAn.qaqc \
PEcAn.remote PEcAn.workflow

MODELS_RUNIVERSE := PEcAn.allometry PEcAn.assim.batch PEcAnAssimSequential PEcAn.benchmark PEcAn.data.atmosphere PEcAn.data.hydrology \
PEcAn.data.land PEcAn.data.remote PEcAn.emulator \
PEcAn.MA PEcAn.photosynthesis PEcAn.priors PEcAnRTM PEcAn.uncertainty

MODULES_RUNIVERSE := PEcAn.BASGRA PEcAn.BIOCRO PEcAn.CLM45 PEcAn.DALEC PEcAn.dvmdostem PEcAn.ED2 PEcAn.FATES PEcAn.GDAY PEcAn.JULES \
PEcAn.LINKAGES PEcAn.LPJGUESS PEcAn.MAAT PEcAn.MAESPA PEcAn.PRELES PEcAn.SIBCASA PEcAn.SIPNET PEcAn.STICS PEcAn.ModelName \
PEcAn.all

# Components not currently included in the build
# (Most need more development first)
# models: cable
Expand All @@ -23,9 +35,9 @@ MODELS := $(MODELS:%=models/%)
MODULES := $(MODULES:%=modules/%)
ALL_PKGS := $(BASE) $(MODULES) $(MODELS)

BASE_I := $(BASE:%=.install/%)
MODELS_I := $(MODELS:%=.install/%)
MODULES_I := $(MODULES:%=.install/%)
BASE_I := $(BASE_RUNIVERSE:%=.install/%)
MODELS_I := $(MODELS_RUNIVERSE:%=.install/%)
MODULES_I := $(MODULES_RUNIVERSE:%=.install/%)
ALL_PKGS_I := $(BASE_I) $(MODULES_I) $(MODELS_I)
SHINY_I := $(SHINY:shiny/%=.shiny_depends/%)

Expand Down Expand Up @@ -74,7 +86,8 @@ depends_R_pkg = ./scripts/time.sh "depends ${1}" ./scripts/confirm_deps.R ${1} \
$(if $(findstring modules/benchmark,$(1)),NA,TRUE)
install_R_pkg = ./scripts/time.sh "install ${1}" Rscript \
-e ${SETROPTIONS} \
-e "devtools::install('$(strip $(1))', upgrade=FALSE)"
-e "install.packages('$(strip $(1))', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org'))"

check_R_pkg = ./scripts/time.sh "check ${1}" Rscript scripts/check_with_errors.R $(strip $(1))
test_R_pkg = ./scripts/time.sh "test ${1}" Rscript \
-e "devtools::test('$(strip $(1))'," \
Expand All @@ -99,7 +112,7 @@ depends = .doc/$(1) .install/$(1) .check/$(1) .test/$(1)
.PHONY: all install check test document shiny \
check_base check_models check_modules

all: install document
all: installFromRUniverse


check_base: $(BASE_C)
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