Code

{WIP} LPJ-GUESS SDA Couplers#2660

Code

Draft

istfer wants to merge 68 commits intoPecanProject:developPecanProject/pecan:developfrom istfer:LPJGUESS_SDAistfer/pecan:LPJGUESS_SDACopy head branch name to clipboard

+10,271-36

Commits

Commits on Jun 8, 2019

• started new read state function

  istfer

  committed
  84f3c25

• add helper function that locates function

  istfer

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  1c96f7d

• add helper function that finds closing paranthesis

  istfer

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  2747330

Commits on Jun 10, 2019

• add function that finds stream

  istfer

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  0518d2c

Commits on Jun 13, 2019

• start reading

  istfer

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  c8fc996

• first read

  istfer

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  4ac6530

• extract typedef enums

  istfer

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  6e92048

• read typedef enum

  istfer

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  6d2bac5

• read Historic

  istfer

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  4221e09

• read vector

  istfer

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  d477ca7

Commits on Jun 14, 2019

• read vector with const int

  istfer

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  b1bf79e

• read in parameters header too

  istfer

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  7faffa8

• case fo seed

  istfer

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  3921cc3

Commits on Jun 15, 2019

• ready to loop over stands

  istfer

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  2f8bbda

• start looping over patches

  istfer

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  b3b0025

• reading individual class

  istfer

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  45970e5

Commits on Jun 16, 2019

• first pass at read individual

  istfer

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  d6ef1ec

Commits on Jun 17, 2019

• finish individual

  istfer

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  d58848d

• few more flexibility

  istfer

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  3ab63d9

• read matrix

  istfer

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  83b996b

• getting ready to read sompool

  istfer

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  f66c54a

Commits on Jun 18, 2019

• catch one more case

  istfer

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  4a6ea5a

• finished soil

  istfer

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  1bb8b87

• adding more hardcoded constants for now

  istfer

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  d84f80f

• getting ready to read fluxes

  istfer

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  f9899dd

• finished patch

  istfer

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  af59c40

• finished reading all - first pass

  istfer

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  4e42c6c

• Added allometry and allocation functions from LPJ-GUESS. Also summing variables to a per-gridcells basis, and first start on updating the state.

  MagicForrest

  committed
  94d304c

Commits on Jun 19, 2019

• read meta.bin

  istfer

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  cc3cceb

• allocation() function now correctly included

  MagicForrest

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  b88b529

• k_latosa is sapwood_ratio in pecan

  istfer

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  64fbdeb

• Merge branch 'develop' of github.com:PecanProject/pecan into LPJGUESS_SDA

  istfer

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  bbb97a6

• small rearrangement for compilation

  istfer

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  58709a6

• add new par minmoist_est

  istfer

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  c27d10f

• Allocation of biomass now also works. It seems to fail when scaling biomass down ~0.55 or less. cmass_debt is not included in the calculation and scaled like the other pools.

  MagicForrest

  committed
  645bb7d

Commits on Jun 20, 2019

• using phenology and leafphysiognomy

  istfer

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  50170e2

• Added allometry() call. Gives the target results for a biomass change doen to about 0.7. Also updated the way of tracking individuals to better facilitate looping.

  MagicForrest

  committed
  e479b8d

• Factorised the adjustDensity and adjustBiomass code.

  MagicForrest

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  05dcadb

Commits on Jun 21, 2019

• few modifications for PalEON model version

  istfer

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  a601256

• parsing files some more

  istfer

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  0c6f624

• Also scale and adjust N pools.

  MagicForrest

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  3293a0d

• Mostly code tidying/documentation ahead of merging.

  MagicForrest

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  aae14e6

• Merge branch 'LPJGUESS_SDA' into LPJGUESS_SDA

  istfer

  authored
  2b4e6b9

• Merge pull request #2 from MagicForrest/LPJGUESS_SDA

  Show description for 09ea06e
  istfer

  authored
  09ea06e

• modifying function for PalEON version

  istfer

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  6fdb02b

• Merge branch 'LPJGUESS_SDA' of https://github.com/istfer/pecan into LPJGUESS_SDA

  istfer

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  e34ea19

Commits on Jun 22, 2019

• read new PhotosynthesisResults

  istfer

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  c86b1a3

Commits on Jun 24, 2019

• updates for the new model version, first pass finished

  istfer

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  ecc6faf

• Documented adjustBiomass() and cleaned the fucntion a little.

  MagicForrest

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  cb206bf

• start read_restart.LPJGUESS

  istfer

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  3df3ec0

• LPJGUESS uses exact days and will require split inputs function

  istfer

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  a0d938e

• backbone of read_restart

  istfer

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  9f8e777

• Added HEIGHT_MAX as an argument to over-ride the LPJ-GUESS 150m max height.

  MagicForrest

  committed
  aa3acf5

• Merge branch 'LPJGUESS_SDA' of github.com:MagicForrest/pecan into LPJGUESS_SDA

  MagicForrest

  committed
  85c4a1f

Commits on Jun 25, 2019

• start split inputs for LPJGUESS

  istfer

  committed
  49085a5

Commits on Jun 26, 2019

• number of individuals are back

  istfer

  committed
  90c4c07

Commits on Jun 27, 2019

• Just coding style

  MagicForrest

  committed
  a0572c0

• Merge branch 'LPJGUESS_SDA' into LPJGUESS_SDA

  istfer

  authored
  fa628db

• Merge pull request #3 from MagicForrest/LPJGUESS_SDA

  Show description for 4f60bce
  istfer

  authored
  4f60bce

• define state year

  istfer

  committed
  3adac8e

• Merge branch 'LPJGUESS_SDA' of https://github.com/istfer/pecan into LPJGUESS_SDA

  istfer

  committed
  94da6de

Commits on Jun 28, 2019

• add doc tags

  istfer

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  14d05f6

• LPJGUESS package build

  istfer

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  47a7c05

• no need for single quote

  istfer

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  e6d5138

• Merge branch 'develop' of github.com:PecanProject/pecan into LPJGUESS_SDA

  istfer

  committed
  2273bbd

Commits on Jul 17, 2020

• Merge branch 'develop' of github.com:PecanProject/pecan into LPJGUESS_SDA

  istfer

  committed
  0f94f65

Commits on May 4, 2023

• Merge branch 'develop' into LPJGUESS_SDA

  infotroph

  authored
  4c5530a

Commits on Nov 8, 2024

• Merge branch 'develop' into LPJGUESS_SDA

  mdietze

  authored
  82dd326