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Build book from pecan revision 1b181347a2b632f7a53bac4976777d1dea587483
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12 changes: 5 additions & 7 deletions develop/404.html
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<meta name="author" content="By: PEcAn Team" />


<meta name="date" content="2024-09-04" />
<meta name="date" content="2024-09-06" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
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<li class="chapter" data-level="7.1" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html"><i class="fa fa-check"></i><b>7.1</b> Additional web configuration</a>
<ul>
<li class="chapter" data-level="7.1.1" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-web-setup"><i class="fa fa-check"></i><b>7.1.1</b> Web interface setup</a></li>
<li class="chapter" data-level="7.1.2" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#browndog"><i class="fa fa-check"></i><b>7.1.2</b> Brown Dog</a></li>
<li class="chapter" data-level="7.1.3" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-advanced-setup"><i class="fa fa-check"></i><b>7.1.3</b> Advanced Setup</a></li>
<li class="chapter" data-level="7.1.4" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-model-config"><i class="fa fa-check"></i><b>7.1.4</b> Editing model configurations</a></li>
<li class="chapter" data-level="7.1.2" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-advanced-setup"><i class="fa fa-check"></i><b>7.1.2</b> Advanced Setup</a></li>
<li class="chapter" data-level="7.1.3" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-model-config"><i class="fa fa-check"></i><b>7.1.3</b> Editing model configurations</a></li>
</ul></li>
<li class="chapter" data-level="7.2" data-path="settings-configured-analyses.html"><a href="settings-configured-analyses.html"><i class="fa fa-check"></i><b>7.2</b> Settings-configured analyses</a>
<ul>
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<li class="chapter" data-level="12.2.5" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-state-data-assimilation"><i class="fa fa-check"></i><b>12.2.5</b> (experimental) State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.6" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-state-variables"><i class="fa fa-check"></i><b>12.2.6</b> State Variables for State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.7" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-observation-preparation"><i class="fa fa-check"></i><b>12.2.7</b> Observation Preparation for State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.8" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-browndog"><i class="fa fa-check"></i><b>12.2.8</b> (experimental) Brown Dog</a></li>
<li class="chapter" data-level="12.2.9" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-benchmarking"><i class="fa fa-check"></i><b>12.2.9</b> (experimental) Benchmarking</a></li>
<li class="chapter" data-level="12.2.10" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-remote_process"><i class="fa fa-check"></i><b>12.2.10</b> Remote data module</a></li>
<li class="chapter" data-level="12.2.8" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-benchmarking"><i class="fa fa-check"></i><b>12.2.8</b> (experimental) Benchmarking</a></li>
<li class="chapter" data-level="12.2.9" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-remote_process"><i class="fa fa-check"></i><b>12.2.9</b> Remote data module</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="13" data-path="workflow.html"><a href="workflow.html"><i class="fa fa-check"></i><b>13</b> PEcAn workflow (web/workflow.R)</a>
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90 changes: 44 additions & 46 deletions develop/LoadData.html
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12 changes: 5 additions & 7 deletions develop/NewBenchmark.html
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<meta name="author" content="By: PEcAn Team" />


<meta name="date" content="2024-09-04" />
<meta name="date" content="2024-09-06" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
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<li class="chapter" data-level="7.1" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html"><i class="fa fa-check"></i><b>7.1</b> Additional web configuration</a>
<ul>
<li class="chapter" data-level="7.1.1" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-web-setup"><i class="fa fa-check"></i><b>7.1.1</b> Web interface setup</a></li>
<li class="chapter" data-level="7.1.2" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#browndog"><i class="fa fa-check"></i><b>7.1.2</b> Brown Dog</a></li>
<li class="chapter" data-level="7.1.3" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-advanced-setup"><i class="fa fa-check"></i><b>7.1.3</b> Advanced Setup</a></li>
<li class="chapter" data-level="7.1.4" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-model-config"><i class="fa fa-check"></i><b>7.1.4</b> Editing model configurations</a></li>
<li class="chapter" data-level="7.1.2" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-advanced-setup"><i class="fa fa-check"></i><b>7.1.2</b> Advanced Setup</a></li>
<li class="chapter" data-level="7.1.3" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-model-config"><i class="fa fa-check"></i><b>7.1.3</b> Editing model configurations</a></li>
</ul></li>
<li class="chapter" data-level="7.2" data-path="settings-configured-analyses.html"><a href="settings-configured-analyses.html"><i class="fa fa-check"></i><b>7.2</b> Settings-configured analyses</a>
<ul>
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<li class="chapter" data-level="12.2.5" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-state-data-assimilation"><i class="fa fa-check"></i><b>12.2.5</b> (experimental) State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.6" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-state-variables"><i class="fa fa-check"></i><b>12.2.6</b> State Variables for State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.7" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-observation-preparation"><i class="fa fa-check"></i><b>12.2.7</b> Observation Preparation for State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.8" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-browndog"><i class="fa fa-check"></i><b>12.2.8</b> (experimental) Brown Dog</a></li>
<li class="chapter" data-level="12.2.9" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-benchmarking"><i class="fa fa-check"></i><b>12.2.9</b> (experimental) Benchmarking</a></li>
<li class="chapter" data-level="12.2.10" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-remote_process"><i class="fa fa-check"></i><b>12.2.10</b> Remote data module</a></li>
<li class="chapter" data-level="12.2.8" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-benchmarking"><i class="fa fa-check"></i><b>12.2.8</b> (experimental) Benchmarking</a></li>
<li class="chapter" data-level="12.2.9" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-remote_process"><i class="fa fa-check"></i><b>12.2.9</b> Remote data module</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="13" data-path="workflow.html"><a href="workflow.html"><i class="fa fa-check"></i><b>13</b> PEcAn workflow (web/workflow.R)</a>
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14 changes: 5 additions & 9 deletions develop/NewFormat.html
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<meta name="author" content="By: PEcAn Team" />


<meta name="date" content="2024-09-04" />
<meta name="date" content="2024-09-06" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
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<li class="chapter" data-level="7.1" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html"><i class="fa fa-check"></i><b>7.1</b> Additional web configuration</a>
<ul>
<li class="chapter" data-level="7.1.1" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-web-setup"><i class="fa fa-check"></i><b>7.1.1</b> Web interface setup</a></li>
<li class="chapter" data-level="7.1.2" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#browndog"><i class="fa fa-check"></i><b>7.1.2</b> Brown Dog</a></li>
<li class="chapter" data-level="7.1.3" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-advanced-setup"><i class="fa fa-check"></i><b>7.1.3</b> Advanced Setup</a></li>
<li class="chapter" data-level="7.1.4" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-model-config"><i class="fa fa-check"></i><b>7.1.4</b> Editing model configurations</a></li>
<li class="chapter" data-level="7.1.2" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-advanced-setup"><i class="fa fa-check"></i><b>7.1.2</b> Advanced Setup</a></li>
<li class="chapter" data-level="7.1.3" data-path="additional-web-configuration.html"><a href="additional-web-configuration.html#intermediate-model-config"><i class="fa fa-check"></i><b>7.1.3</b> Editing model configurations</a></li>
</ul></li>
<li class="chapter" data-level="7.2" data-path="settings-configured-analyses.html"><a href="settings-configured-analyses.html"><i class="fa fa-check"></i><b>7.2</b> Settings-configured analyses</a>
<ul>
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<li class="chapter" data-level="12.2.5" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-state-data-assimilation"><i class="fa fa-check"></i><b>12.2.5</b> (experimental) State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.6" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-state-variables"><i class="fa fa-check"></i><b>12.2.6</b> State Variables for State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.7" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-observation-preparation"><i class="fa fa-check"></i><b>12.2.7</b> Observation Preparation for State Data Assimilation</a></li>
<li class="chapter" data-level="12.2.8" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-browndog"><i class="fa fa-check"></i><b>12.2.8</b> (experimental) Brown Dog</a></li>
<li class="chapter" data-level="12.2.9" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-benchmarking"><i class="fa fa-check"></i><b>12.2.9</b> (experimental) Benchmarking</a></li>
<li class="chapter" data-level="12.2.10" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-remote_process"><i class="fa fa-check"></i><b>12.2.10</b> Remote data module</a></li>
<li class="chapter" data-level="12.2.8" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-benchmarking"><i class="fa fa-check"></i><b>12.2.8</b> (experimental) Benchmarking</a></li>
<li class="chapter" data-level="12.2.9" data-path="xml-advanced.html"><a href="xml-advanced.html#xml-remote_process"><i class="fa fa-check"></i><b>12.2.9</b> Remote data module</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="13" data-path="workflow.html"><a href="workflow.html"><i class="fa fa-check"></i><b>13</b> PEcAn workflow (web/workflow.R)</a>
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<li>What is the file MIME type?
<ul>
<li>We have a suit of functions for loading in data in open formats such as CSV, txt, netCDF, etc.</li>
<li>PEcAn has partnered with the <a href="http://browndog.ncsa.illinois.edu/">NCSA BrownDog project</a> to create a service that can read and convert as many data formats as possible. If your file type is less common or a proprietary type, you can use the <a href="http://dap.ncsa.illinois.edu/">BrownDog DAP</a> to convert it to a format that can be used with PEcAn.</li>
<li>If BrownDog cannot convert your data, you will need to contact us about writing a data specific load function.</li>
</ul></li>
<li>What variables does the file contain?
<ul>
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