removed -cg from PRIAM

we're not doing complete-genomes
ParkinsonLab · Dec 6, 2022 · d56aa16 · d56aa16
1 parent e389e11
commit d56aa16
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/MetaPro_commands.py b/MetaPro_commands.py
@@ -3034,7 +3034,7 @@ def create_EC_PRIAM_command_v2(self, current_stage_name, ga_final_merge_stage, p
         PRIAM_command += " -p " + self.tool_path_obj.PriamDB
         PRIAM_command += " -o " + priam_out_folder
         PRIAM_command += " --np " + self.threads_str
-        PRIAM_command += " --bh --cc --cg --bp --bd "
+        PRIAM_command += " --bh --cc --bp --bd "
         PRIAM_command += self.tool_path_obj.BLAST_dir
 
         make_marker = "touch" + " "