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@Papatheodorou-Group

Papatheodorou Group

Decoding phenotypes using single cell genomics

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  1. BENGAL BENGAL Public

    Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

    Python 34 8

  2. CATD_snakemake CATD_snakemake Public

    Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets

    R 15 2

  3. scGOclust scGOclust Public

    Gene ontology terms to compare single cell RNA-seq data

    R 9

  4. scOntoMatch scOntoMatch Public

    scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies

    HTML 7

  5. BENGAL_reproducibility BENGAL_reproducibility Public

    BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data

    Jupyter Notebook 3 1

  6. GeneSpectra GeneSpectra Public

    GENE classification and cross-SPECies comparison of cell Types with single cell RNA-seq data

    Python

Repositories

Showing 10 of 11 repositories
  • GeneSpectra Public

    GENE classification and cross-SPECies comparison of cell Types with single cell RNA-seq data

    Papatheodorou-Group/GeneSpectra’s past year of commit activity
    Python 0 0 0 0 Updated Oct 2, 2024
  • Papatheodorou-Group/GBC_SUM159PT_paper_figures’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Sep 10, 2024
  • Papatheodorou-Group/GBC_SUM159PT_paper’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Sep 10, 2024
  • CATD_snakemake Public

    Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets

    Papatheodorou-Group/CATD_snakemake’s past year of commit activity
    R 15 GPL-3.0 2 1 0 Updated Aug 1, 2024
  • GeneSpectraKG Public

    Biocypher KG for GeneSpectra results

    Papatheodorou-Group/GeneSpectraKG’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 21, 2024
  • BENGAL Public

    Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

    Papatheodorou-Group/BENGAL’s past year of commit activity
    Python 34 GPL-3.0 8 5 0 Updated Apr 4, 2024
  • scGOclust Public

    Gene ontology terms to compare single cell RNA-seq data

    Papatheodorou-Group/scGOclust’s past year of commit activity
    R 9 GPL-3.0 0 1 0 Updated Feb 28, 2024
  • BENGAL_reproducibility Public

    BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data

    Papatheodorou-Group/BENGAL_reproducibility’s past year of commit activity
    Jupyter Notebook 3 MIT 1 0 0 Updated Jan 17, 2024
  • CATD_reproducibility Public

    Notebooks and scripts for reproducing CATD paper

    Papatheodorou-Group/CATD_reproducibility’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jan 11, 2024
  • scGOclust_reproducibility Public

    Notebooks and files from the scGOclust study

    Papatheodorou-Group/scGOclust_reproducibility’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 20, 2023

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