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@dportik dportik released this 22 Aug 23:03
· 32 commits to master since this release
v2.1.0
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HiFi-MAG-Pipeline:
Bug fix. Given a reference longer than 4Gb, minimap2 is unable to see all the sequences and thus can't produce a correct SAM header. This throws an error in the MinimapToBam rule with the sorting step. This fix avoids the issue by splitting this rule into two new rules: MinimapIndex and MinimapToBam. These rules index the reference prior to alignment and run minimap2 with the --split-prefix option, respectively.

Taxonomic-Profiling-Diamond-Megan:

  • Bug fix (#65). Created separate environments for rules to prevent bad env recipes.
  • Feature request (#20). Added access to KEGG annotations with MEGAN-UE. New snakemake added to repo called Snakefile-diamond-megan-ue.smk to enable workflow. Docs updated to explain usage and file download requirements (requires binaries from MEGAN-UE and mapping file for MEGAN-UE). Apparently does not require a license to map KEGG annotations using CLI tools.
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