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@dportik dportik released this 13 Apr 18:04
· 117 commits to master since this release
v1.5.0
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Learn about vigilant mode.

HiFi-MAG-Pipeline:

  • Updated to require GTDB-Tk V2.0.0+, and ensured compatibility with GTDB 07-RS207 (release 207).
  • Set default max contigs per MAG to 20.
  • Updated docs, including image showing "circular-aware binning" strategy.

Taxonomic-Functional-Profiling-Protein:

  • New default behavior is to output two RMA files per sample. The {sample}_filtered.protein.{mode}.rma results from the optimal MEGAN-LR filter for precision/recall balance, whereas the {sample}_unfiltered.protein.{mode}.rma file has no filtering (e.g., any read assigned to any taxon is reported). The filtering parameter for {sample}_filtered.protein.{mode}.rma is still be controlled with the sam2rma: minSupportPercent argument in the config.yaml file; the default is 0.01.
  • Ensured compatibility with newest MEGAN mapping file: megan-map-Feb2022.db.zip.
  • Updated docs.
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