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Merge develop into main to fix submodule clone error #19

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merged 4 commits into from
Mar 5, 2024
Merged

Merge develop into main to fix submodule clone error #19

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8f7d5f0
fix: Changed submodule URL to relative, so that it will work with bot…
williamrowell Feb 20, 2024
c72f81d
Merge pull request #18 from PacificBiosciences/bugfix/submodule-url
williamrowell Feb 20, 2024
0b7934a
bump release version and absolute urls for logo/diagrams
gconcepcion Feb 20, 2024
082566c
Merge branch 'develop' of github.com:PacificBiosciences/HiFi-human-as…
gconcepcion Feb 20, 2024
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2 changes: 1 addition & 1 deletion .gitmodules
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
[submodule "workflows/wdl-common"]
path = workflows/wdl-common
url = [email protected]:PacificBiosciences/wdl-common.git
url = ../wdl-common.git
6 changes: 3 additions & 3 deletions README.md
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@@ -1,4 +1,4 @@
<h1 align="center"><img width="300px" src="images/logo_wdl_workflows.svg"/></h1>
<h1 align="center"><img width="300px" src="https://github.com/PacificBiosciences/HiFi-human-assembly-WDL/raw/main/images/logo_wdl_workflows.svg"/></h1>

<h1 align="center">PacBio Human Assembly Pipeline</h1>

Expand All @@ -13,15 +13,15 @@ Workflow for running de novo assembly using human PacBio whole genome sequencing

The assembly workflow performs _de novo_ assembly on samples and trios.

![De novo assembly workflow diagram](images/main.graphviz.svg "De novo assembly workflow diagram")
![De novo assembly workflow diagram](https://github.com/PacificBiosciences/HiFi-human-assembly-WDL/raw/main/images/main.graphviz.svg "De novo assembly workflow diagram")

## Setup

Clone a tagged version of the git repository. Use the `--branch` flag to pull the desired version, and the `--recursive` flag to pull code from any submodules.

```
git clone \
--depth 1 --branch v1.0.0 \ # for reproducibility
--depth 1 --branch v1.0.1 \ # for reproducibility
--recursive \ # to clone submodule
https://github.com/PacificBiosciences/HiFi-human-assembly-WDL.git
```
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