updated data mapping

PNNL-CompBio · Apr 21, 2021 · 7a8879b · 7a8879b
1 parent 369db8a
commit 7a8879b
Showing 1 changed file with 12 additions and 2 deletions.
diff --git a/simulatedData/mapSimDataMatrices.R b/simulatedData/mapSimDataMatrices.R
@@ -3,8 +3,18 @@ main <- function(){
     deconv.mat <- read.table(argv[1],header=T,row.names=1,sep='\t') #matrix to be fixed
     sig.mat <- argv[2] #signature used to deconvolve matrix
     sim.type <- argv[3] #type of simulation performed
-
-    if(sig.mat=='LM9.txt')
+    sig.mat<-basename(sig.mat)
+
+    if(sig.mat=='LM9.txt'){
+
+    }else if(sig.mat=='LM22.txt'){
+
+    }else if(sig.mat=='LM7c.txt'){
+
+    }else if(sig.mat=='PBMC'){
+
+    }
+
     write.table(deconv.mat,file='fixed.tsv',sep='\t')
 }