Attempting to surpass naming errors. #40
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| name: SYN memote tracking | |
| on: | |
| push: | |
| branches: [ "main", "add_missing_rxns"] | |
| jobs: | |
| memote-history: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout model | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Checkout concerto | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: PNNL-CompBio/CONCERTO | |
| path: 'concerto_path' | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10.6' | |
| - name: Install memote | |
| run: pip install memote cobra pytest~=7.0 | |
| - name: Setup variables | |
| id: setup | |
| run: | | |
| echo "snapshot=snapshot_report.html" >> $GITHUB_ENV | |
| echo "history=history_report.html" >> $GITHUB_ENV | |
| echo "deployment=gh-pages" >> $GITHUB_ENV | |
| echo "custom_tests=syn_elong/custom_tests" >> $GITHUB_ENV | |
| echo "MEMOTE_LOCATION=results" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH:concerto_path" >> $GITHUB_ENV | |
| - name: Memote short run | |
| run: | | |
| git config --global user.email "${GITHUB_ACTOR}@users.noreply.github.com" | |
| git config --global user.name "${GITHUB_ACTOR}" | |
| git checkout gh-pages | |
| git checkout ${{ github.ref_name }} | |
| memote run --custom-tests=${{ env.custom_tests }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Compute Memote history on push | |
| run: | | |
| git checkout gh-pages | |
| # Generate the history report on the deployment branch | |
| memote report history --filename="${{ env.history }}" | |
| - name: Auto-commit results | |
| uses: stefanzweifel/[email protected] | |
| with: | |
| commit_user_name: memote-bot | |
| commit_message: "chore: update memote history report" | |
| file_pattern: "*_report.html" | |
| branch: gh-pages | |
| repository: . | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Memote run | |
| run: | | |
| git checkout ${{ github.ref_name }} | |
| memote report snapshot \ | |
| --filename="${{ env.snapshot }}" \ | |
| --custom-tests=${{ env.custom_tests }} | |
| mv ${{ env.snapshot }} tmp.html | |
| git checkout gh-pages | |
| mv tmp.html ${{ env.snapshot }} | |
| - name: Auto-commit results | |
| uses: stefanzweifel/[email protected] | |
| with: | |
| commit_user_name: memote-bot | |
| commit_message: "chore: update memote history report" | |
| file_pattern: "*_report.html" | |
| branch: gh-pages | |
| repository: . | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |