Open tree PURLs

Note

• Do not create a PURL related to the open tree project without updating this file
• Put all Open Tree related PURLs in http://purl.org/opentree/
• It would be nice if the places were particular PURLs are used were recorded below
• Currently Karen and Jonathan are able to make changes to the opentree domain on purl.org
• We should have a script that checks them all for resolvability
• Check that this is a complete list
• Need to update some of these links e.g. gbif

Various

See https://github.com/OpenTreeOfLife/opentree/issues/338. A quick search (via google) for "purl.org/opentree" yields a few:

http://purl.org/opentree-terms
URI prefix for NexSON metadata; doesn't resolve as a destination. Used in json blobs produced by peyotl? This should be phased out in favor of http://purl.org/opentree/nexson; see opentree#1119

http://purl.org/opentree/data-sharing
Describes prerequisites for submitting data to OpenTree. Referenced here.

http://purl.org/opentree/nexson
Link to NexSON [documentation - this URL is used in nexson files and currently links to https://github.com/OpenTreeOfLife/phylesystem-api/wiki/NexSON].

Link to GBIF (not served by open tree)

• http://purl.org/opentree/gbif-backbone-2013-07-02.zip As of 2015-06-29, this redirects to http://rs.gbif.org/datasets/backbone/backbone.zip

Mentioned in the OTT 2.8 release notes

• http://purl.org/opentree/ott/ott2.8/ott2.8.tgz (gzipped tar file, 119 Mbyte)
• http://purl.org/opentree/ott/ott2.8/inputs/hibbett-20140313.tre
• http://purl.org/opentree/ott/ott2.8/inputs/if-20140514.tgz
• http://purl.org/opentree/ott/ott2.8/inputs/lamiales-20140118.tsv
• http://purl.org/opentree/ott/ott2.8/inputs/taxdump-20140611.tgz
• http://purl.org/opentree/ott/ott2.8/inputs/IRMNG_DWC-2014-01-30.zip

Mentioned in the OTT 2.6 release notes

• http://purl.org/opentree/ott2.6-inputs/feed/ncbi/taxdump.tar.gz
• http://purl.org/opentree/ott2.6-inputs/tax/if/taxonomy.tsv
• http://purl.org/opentree/ott2.6-inputs/tax/if/synonyms.tsv
• http://purl.org/opentree/ott2.6-inputs/feed/irmng/in/IRMNG_DWC.zip (2014-01-13 version, no species)
• http://purl.org/opentree/ott/ott2.5.tgz

Snapshot from purl.org admin UI, 2017-02-03

/opentree/data-sharing 	302 Found 	http://blog.opentreeoflife.org/data-sharing 	2013-08-28 20:41:40
/opentree/nexson 	302 Found 	https://github.com/OpenTreeOfLife/phylesystem-api/wiki/NexSON 	2014-01-28 16:28:27
/opentree/gbif-backbone-2013-07-02.zip 	302 Found 	http://rs.gbif.org/datasets/backbone/backbone.zip 	2014-05-28 10:49:48
/opentree/ott2.6-inputs/ 	partial 	http://files.opentreeoflife.org/ott/2.6-inputs/ 	2014-05-28 11:30:08
/opentree/ott/ott2.5.tgz 	302 Found 	http://files.opentreeoflife.org/ott/ott2.5.tgz 	2014-05-28 13:59:01
/opentree/ott/ott2.6.tgz 	302 Found 	http://files.opentreeoflife.org/ott/ott2.6.tgz 	2014-05-28 14:05:11
/opentree/ott2.8-inputs/ 	partial 	http://files.opentreeoflife.org/ott/ott2.8/inputs/ 	2014-11-26 11:28:25
/opentree/ott/ott2.8/ 	partial 	http://files.opentreeoflife.org/ott/ott2.8/ 	2014-12-01 17:10:34