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@OpenOmics

OpenOmics

Open Bioinformatics Research
README.md

Welcome to OpenOmics

GIF

We are a diverse group of Bioinformatics scientists, developers, and data scientists on a mission to push science forward.

We believe in open, reproducible, collaborative scientific research, and the strength of community led efforts. We recognize that together as a group we build strong. OpenOmics serves as a place to connect and engage with other community members, share ideas, and build pipelines & tools that enable the greater scientific community.

If you are a new member, welcome! Before getting started, please take a moment to read through our code of conduct. If you have any questions, please feel free to start a discussion.

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  1. genome-seek genome-seek Public

    Clinical Whole Genome and Exome Sequencing Pipeline

    Python 18 11

  2. RNA-seek RNA-seek Public

    Forked from skchronicles/RNA-seek

    A comprehensive quality-control and quantification RNA-seq pipeline

    Python 4 2

  3. modr modr Public

    An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

    Python 5 1

  4. metavirs metavirs Public

    Viral Metagenomics Assembly and Annotation Pipeline

    Python 4 1

  5. cell-seek cell-seek Public

    One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

    Python 1 1

  6. chrom-seek chrom-seek Public

    An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

    Python 5 2

Repositories

Showing 10 of 44 repositories
  • cell-seek Public

    One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

    OpenOmics/cell-seek’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Dec 27, 2024
  • chrom-seek Public

    An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

    OpenOmics/chrom-seek’s past year of commit activity
    Python 5 MIT 2 12 1 Updated Dec 27, 2024
  • nanite Public

    A streamlined Oxford Nanopore Viral Metagenomics Pipeline

    OpenOmics/nanite’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Dec 23, 2024
  • genome-seek Public

    Clinical Whole Genome and Exome Sequencing Pipeline

    OpenOmics/genome-seek’s past year of commit activity
    Python 18 MIT 11 4 0 Updated Dec 19, 2024
  • RNA-seek Public Forked from skchronicles/RNA-seek

    A comprehensive quality-control and quantification RNA-seq pipeline

    OpenOmics/RNA-seek’s past year of commit activity
    Python 4 MIT 12 0 0 Updated Dec 17, 2024
  • metavirs Public

    Viral Metagenomics Assembly and Annotation Pipeline

    OpenOmics/metavirs’s past year of commit activity
    Python 4 MIT 1 2 0 Updated Dec 10, 2024
  • dockerfiles Public

    Dockerfiles for reproducible scientific research and beyond!

    OpenOmics/dockerfiles’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 6, 2024
  • scribble Public

    Scripts/code-snippets, somewhere in-between bioinformatics and data science, and oneliners

    OpenOmics/scribble’s past year of commit activity
    Python 4 MIT 3 0 0 Updated Dec 6, 2024
  • brakerMake Public

    Snakemake pipeline for annotating with braker and adding functional information

    OpenOmics/brakerMake’s past year of commit activity
    Python 1 0 0 0 Updated Dec 6, 2024
  • mpox-seek Public

    A rapid pipeline for targeted ONT monkeypox sequencing

    OpenOmics/mpox-seek’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 19, 2024
View all repositories

People

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