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update manifest
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@kose-y
kose-y committed Jul 27, 2021
1 parent 1619426 commit fcda7c3
Showing 1 changed file with 44 additions and 39 deletions.
83 changes: 44 additions & 39 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,9 +17,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"

[[ArrayInterface]]
deps = ["IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
git-tree-sha1 = "045ff5e1bc8c6fb1ecb28694abba0a0d55b5f4f5"
git-tree-sha1 = "a71d224f61475b93c9e196e83c17c6ac4dedacfa"
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "3.1.17"
version = "3.1.18"

[[Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
Expand All @@ -32,11 +32,11 @@ version = "0.8.0"

[[BGEN]]
deps = ["CodecZlib", "CodecZstd", "Printf", "SIMD", "SQLite", "SpecialFunctions", "Statistics", "Tables", "TranscodingStreams"]
git-tree-sha1 = "3809273134723bcb0474be661b4dd49752bc8e5e"
git-tree-sha1 = "38dec323634c50e649b9c1b319e6c71236fed1d7"
repo-rev = "main"
repo-url = "https://github.com/OpenMendel/BGEN.jl"
uuid = "6db4b851-9beb-4b83-9d64-eb1cfb37721d"
version = "0.1.2"
version = "0.1.3"

[[BGZFStreams]]
deps = ["CodecZlib", "Test"]
Expand Down Expand Up @@ -91,9 +91,9 @@ version = "0.10.0"

[[ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "f53ca8d41e4753c41cdafa6ec5f7ce914b34be54"
git-tree-sha1 = "ad613c934ec3a3aa0ff19b91f15a16d56ed404b5"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "0.10.13"
version = "1.0.2"

[[CodecBzip2]]
deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
Expand Down Expand Up @@ -211,10 +211,10 @@ uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
version = "1.10.1"

[[FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays"]
git-tree-sha1 = "25b9cc23ba3303de0ad2eac03f840de9104c9253"
deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
git-tree-sha1 = "8c8eac2af06ce35973c3eadb4ab3243076a408e7"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "0.12.0"
version = "0.12.1"

[[Formatting]]
deps = ["Printf"]
Expand All @@ -238,10 +238,10 @@ uuid = "c27321d9-0574-5035-807b-f59d2c89b15c"
version = "1.3.0"

[[HTTP]]
deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"]
git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508"
deps = ["Base64", "Dates", "IniFile", "Logging", "MbedTLS", "NetworkOptions", "Sockets", "URIs"]
git-tree-sha1 = "c6a1fff2fd4b1da29d3dccaffb1e1001244d844e"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "0.8.19"
version = "0.9.12"

[[Hwloc]]
deps = ["Hwloc_jll"]
Expand Down Expand Up @@ -284,15 +284,15 @@ version = "1.0.0"

[[Ipopt]]
deps = ["BinaryProvider", "Ipopt_jll", "Libdl", "LinearAlgebra", "MathOptInterface", "MathProgBase"]
git-tree-sha1 = "d0f3cc6fa341859910a8ee0fdd397862042af290"
git-tree-sha1 = "380786b4929b8d18d76e909c6b2eca355b7c3bd6"
uuid = "b6b21f68-93f8-5de0-b562-5493be1d77c9"
version = "0.6.3"
version = "0.7.0"

[[Ipopt_jll]]
deps = ["ASL_jll", "CompilerSupportLibraries_jll", "Libdl", "MUMPS_seq_jll", "OpenBLAS32_jll", "Pkg"]
git-tree-sha1 = "4247bc93c3f0cb3d23a9d221e6d23d5449b4d90d"
deps = ["ASL_jll", "Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "MUMPS_seq_jll", "OpenBLAS32_jll", "Pkg"]
git-tree-sha1 = "82124f27743f2802c23fcb05febc517d0b15d86e"
uuid = "9cc047cb-c261-5740-88fc-0cf96f7bdcc7"
version = "3.13.1+1"
version = "3.13.4+2"

[[IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
Expand Down Expand Up @@ -361,9 +361,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[LoopVectorization]]
deps = ["ArrayInterface", "DocStringExtensions", "IfElse", "LinearAlgebra", "OffsetArrays", "Polyester", "Requires", "SLEEFPirates", "Static", "StrideArraysCore", "ThreadingUtilities", "UnPack", "VectorizationBase"]
git-tree-sha1 = "06c91d5495c32bca6b843551a1331c3cd2fb23d0"
git-tree-sha1 = "1578cc856a165170a9572602e885c8511d81da1e"
uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
version = "0.12.53"
version = "0.12.56"

[[METIS_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -373,9 +373,9 @@ version = "5.1.0+5"

[[MUMPS_seq_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "METIS_jll", "OpenBLAS32_jll", "Pkg"]
git-tree-sha1 = "a1d469a2a0acbfe219ef9bdfedae97daacac5a0e"
git-tree-sha1 = "1a11a84b2af5feb5a62a820574804056cdc59c39"
uuid = "d7ed1dd3-d0ae-5e8e-bfb4-87a502085b8d"
version = "5.4.0+0"
version = "5.2.1+4"

[[ManualMemory]]
git-tree-sha1 = "71c64ebe61a12bad0911f8fc4f91df8a448c604c"
Expand Down Expand Up @@ -472,11 +472,11 @@ version = "1.4.1"

[[OrdinalMultinomialModels]]
deps = ["Distributions", "GLM", "Ipopt", "LinearAlgebra", "MathProgBase", "NLopt", "RDatasets", "Random", "Reexport", "StatsBase", "StatsModels"]
git-tree-sha1 = "636b99b00955b248dcc5f66c885263c87b2d311b"
git-tree-sha1 = "9cfe6b1598ea517241caff1869799ce24fba9d98"
repo-rev = "master"
repo-url = "https://github.com/OpenMendel/OrdinalMultinomialModels.jl"
uuid = "b51826c6-2bc1-4eb0-a3af-c080fd29f1d0"
version = "0.3.3"
version = "0.3.4"

[[PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
Expand All @@ -496,9 +496,9 @@ uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

[[Polyester]]
deps = ["ArrayInterface", "IfElse", "ManualMemory", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities", "VectorizationBase"]
git-tree-sha1 = "2a5e179a459867e0046d4e74e1a8cfc88a06ee4a"
git-tree-sha1 = "4b692c8ce1912bae5cd3b90ba22d1b54eb581195"
uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
version = "0.3.6"
version = "0.3.7"

[[PooledArrays]]
deps = ["DataAPI", "Future"]
Expand Down Expand Up @@ -598,9 +598,9 @@ version = "3.3.1"

[[SLEEFPirates]]
deps = ["IfElse", "Static", "VectorizationBase"]
git-tree-sha1 = "da6d214ffc85b1292f300649ef86d3c4f9aaf25d"
git-tree-sha1 = "bfdf9532c33db35d2ce9df4828330f0e92344a52"
uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa"
version = "0.6.22"
version = "0.6.25"

[[SQLite]]
deps = ["BinaryProvider", "DBInterface", "Dates", "Libdl", "Random", "SQLite_jll", "Serialization", "Tables", "Test", "WeakRefStrings"]
Expand Down Expand Up @@ -634,11 +634,11 @@ version = "1.0.0"

[[SnpArrays]]
deps = ["Adapt", "CSV", "CodecBzip2", "CodecXz", "CodecZlib", "CodecZstd", "DataFrames", "DelimitedFiles", "Glob", "LinearAlgebra", "LoopVectorization", "Missings", "Mmap", "Printf", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Tables", "TranscodingStreams", "VariantCallFormat", "VectorizationBase"]
git-tree-sha1 = "9feadd65d7bf786ed7bb46ebf0c4e61ae6d897ed"
git-tree-sha1 = "ecc17d27ee89dbedfedd1fd394bfc2bb8a9bdd73"
repo-rev = "master"
repo-url = "https://github.com/OpenMendel/SNPArrays.jl"
uuid = "4e780e97-f5bf-4111-9dc4-b70aaf691b06"
version = "0.3.8"
version = "0.3.9"

[[Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
Expand All @@ -655,15 +655,15 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[SpecialFunctions]]
deps = ["ChainRulesCore", "LogExpFunctions", "OpenSpecFun_jll"]
git-tree-sha1 = "a50550fa3164a8c46747e62063b4d774ac1bcf49"
git-tree-sha1 = "508822dca004bf62e210609148511ad03ce8f1d8"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
version = "1.5.1"
version = "1.6.0"

[[Static]]
deps = ["IfElse"]
git-tree-sha1 = "2740ea27b66a41f9d213561a04573da5d3823d4b"
git-tree-sha1 = "62701892d172a2fa41a1f829f66d2b0db94a9a63"
uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
version = "0.2.5"
version = "0.3.0"

[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
Expand Down Expand Up @@ -694,9 +694,9 @@ version = "0.6.23"

[[StrideArraysCore]]
deps = ["ArrayInterface", "ManualMemory", "Requires", "ThreadingUtilities", "VectorizationBase"]
git-tree-sha1 = "2525850b6887e217c3cc149ab29eb2a7a6360d37"
git-tree-sha1 = "e1c37dd3022ba6aaf536541dd607e8d5fb534377"
uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
version = "0.1.16"
version = "0.1.17"

[[StringEncodings]]
deps = ["Libiconv_jll"]
Expand Down Expand Up @@ -740,9 +740,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[ThreadingUtilities]]
deps = ["ManualMemory"]
git-tree-sha1 = "593009385e6536dc50baedc2c8bc1a3717ef358f"
git-tree-sha1 = "03013c6ae7f1824131b2ae2fc1d49793b51e8394"
uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5"
version = "0.4.5"
version = "0.4.6"

[[TimeZones]]
deps = ["Dates", "Future", "LazyArtifacts", "Mocking", "Pkg", "Printf", "RecipesBase", "Serialization", "Unicode"]
Expand All @@ -756,6 +756,11 @@ git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.9.5"

[[URIs]]
git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.3.0"

[[UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
Expand All @@ -770,11 +775,11 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[VCFTools]]
deps = ["CodecZlib", "Dates", "DelimitedFiles", "Distributions", "HypothesisTests", "ProgressMeter", "SpecialFunctions", "VariantCallFormat"]
git-tree-sha1 = "8e42021ff8c380ce554212f58e7f87bff0a64168"
git-tree-sha1 = "54f0ac2be74f5ac461f4f87ef73148380f498fd6"
repo-rev = "master"
repo-url = "https://github.com/OpenMendel/VCFTools.jl"
uuid = "a620830f-fdd7-5ebc-8d26-3621ab35fbfe"
version = "0.2.1"
version = "0.2.2"

[[VariantCallFormat]]
deps = ["Automa", "BGZFStreams", "BioCore", "BufferedStreams"]
Expand Down

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