Setup ospsuite R on Ubuntu

Install on Ubuntu 18.04

GIT

sudo apt install git

NUGET

sudo apt install nuget
sudo nuget update -self

LIBS

sudo apt update
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libssl-dev
sudo apt install libxml2-dev
sudo apt install librsvg2-bin

MONO

sudo apt install gnupg ca-certificates
sudo apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys 3FA7E0328081BFF6A14DA29AA6A19B38D3D831EF
echo "deb https://download.mono-project.com/repo/ubuntu stable-bionic/snapshots/5.18 main" | sudo tee /etc/apt/sources.list.d/mono-official-stable.list
sudo apt update
sudo apt install mono-complete

Check version with mono -V. It should read 5.18.xxx

.NET CORE SDK (For ubuntu 18.04..).

Install vary based on system. see https://aka.ms/dotnet-download (e.g. https://docs.microsoft.com/en-us/dotnet/core/install/linux-package-manager-ubuntu-1910)

wget -q https://packages.microsoft.com/config/ubuntu/18.04/packages-microsoft-prod.deb -O packages-microsoft-prod.deb
sudo dpkg -i packages-microsoft-prod.deb

sudo add-apt-repository universe
sudo apt-get update
sudo apt-get install apt-transport-https
sudo apt-get update
sudo apt-get install dotnet-sdk-3.1

Check version with dotnet --version. It should read 3.1.xxx

Install R

sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
sudo apt-get update
sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/'
sudo apt install r-base

Install R Packages

Within a R sesssion in a terminal

install.package('devtools')
devtools::install_github("Open-Systems-Pharmacology/rClr")

If you need to install package from folder do the following

git clone https://github.com/Open-Systems-Pharmacology/rClr.git
cd rClr

Within a R sesssion in a terminal

devtools::install_local("PATH TO INSTALL")

Download ospsuite-r_9.0.18.zip package and unzip it then from within a R session (replace with the path of the package)

devtools::install_local("/home/michael/Desktop/ospsuite_9.0.18/ospsuite")

Install ramaining dependencies for Reporting Engine

devtools::install_github("Open-Systems-Pharmacology/TLF-Library")
devtools::install_github("Open-Systems-Pharmacology/OSPSuite.ReportingEngine")

Start R Studio with the updated lib path

export LD_LIBRARY_PATH=~/OSPSuite-R/inst/lib/:LD_LIBRARY_PATH