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fixed a citation
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jagoosw committed Sep 5, 2023
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15 changes: 15 additions & 0 deletions paper/paper.bib
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Expand Up @@ -161,3 +161,18 @@ @book{NationalAcademies2022
year = 2022,
doi = {10.17226/26278}
}

@article{taylor:2016,
author = {Taylor, J. R.},
doi = {10.1002/2016GL069106},
issn = {19448007},
issue = {11},
journal = {Geophysical Research Letters},
publisher = {Blackwell Publishing Ltd},
month = {6},
pages = {5784-5792},
volume = {43},
bdsk-url-1 = {https://doi.org/10.1002/2016GL069106},
title = {Turbulent mixing, restratification, and phytoplankton growth at a submesoscale eddy},
year = {2016}
}
2 changes: 1 addition & 1 deletion paper/paper.md
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Expand Up @@ -66,7 +66,7 @@ As a result, ``OceanBioME.jl`` and ``Oceananigans.jl`` can be used to simulate t
An example of a problem involving small-scale flow features is shown in \autoref{eady}, which shows a simulation of a sub-mesoscale eddy in a 1km x 1km horizontal domain with an intermediate complexity biogeochemical model and a kelp growth model solved along the trajectories of drifting buoys (details of examples mentioned in this paper are listed at the end).
``OceanBioME.jl`` leverages Julia's multiple dispatch and effective inline capabilities to fuse its computations directly into existing ``Oceananigans.jl`` kernels, thus maintaining ``Oceananigans.jl``'s bespoke performance, memory- and cost-efficiency on GPUs in ``OceanBioME.jl``-augmented simulations.

![Here we replicate the Eady problem where a background buoyancy gradient and corresponding thermal wind generate a sub-mesoscale eddy, roughly following the setup of Taylor (2016).
![Here we replicate the Eady problem where a background buoyancy gradient and corresponding thermal wind generate a sub-mesoscale eddy, roughly following the setup of @taylor:2016.
To this physical setup, we added a medium complexity (9 tracers) biogeochemical model, some of which are shown above.
On top of this, we added particles modelling the growth of sugar kelp which are free-floating and advected by the flow, and carbon dioxide exchange from the air.
Thanks to Julia's speed and efficiency the above model (1 km × 1 km × 100 m with 64 × 64 × 16 grid points) took about 30 minutes of computing time to simulate 10 days of evolution on an Nvidia P100 GPU.
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