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#Title of Readme
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<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Function index · OceanBioME.jl</title><script data-outdated-warner src="../../assets/warner.js"></script><link rel="canonical" href="https://OceanBioME.github.io/OceanBioME/stable/appendix/function_index/"/><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.045/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.13.24/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="../.."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../../assets/documenter.js"></script><script src="../../siteinfo.js"></script><script src="../../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../../assets/themeswap.js"></script><link href="../../assets/citations.css" rel="stylesheet" type="text/css"/></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href="../../"><img class="docs-light-only" src="../../assets/logo.png" alt="OceanBioME.jl logo"/><img class="docs-dark-only" src="../../assets/logo-dark.png" alt="OceanBioME.jl logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href="../../">OceanBioME.jl</a></span></div><form class="docs-search" action="../../search/"><input class="docs-search-query" id="documenter-search-query" name="q" type="text" placeholder="Search docs"/></form><ul class="docs-menu"><li><a class="tocitem" href="../../">Home</a></li><li><a class="tocitem" href="../../quick_start/">Quick start</a></li><li><input class="collapse-toggle" id="menuitem-3" type="checkbox"/><label class="tocitem" for="menuitem-3"><span class="docs-label">Examples</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../generated/box/">Box model</a></li><li><a class="tocitem" href="../../generated/column/">Simple column model</a></li><li><a class="tocitem" href="../../generated/eady/">Baroclinic instability</a></li><li><a class="tocitem" href="../../generated/data_forced/">Data forced column model</a></li><li><a class="tocitem" href="../../generated/kelp/">Model with particles (kelp) interacting with the biogeochemistry</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-4" type="checkbox"/><label class="tocitem" for="menuitem-4"><span class="docs-label">Model components and setup</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><input class="collapse-toggle" id="menuitem-4-1" type="checkbox"/><label class="tocitem" for="menuitem-4-1"><span class="docs-label">Biogeochemical models</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../model_components/biogeochemical/">Overview</a></li><li><a class="tocitem" href="../../model_components/biogeochemical/LOBSTER/">LOBSTER</a></li><li><a class="tocitem" href="../../model_components/biogeochemical/NPZ/">NPZD</a></li></ul></li><li><a class="tocitem" href="../../model_components/air-sea-gas/">Air-sea gas exchange</a></li><li><input class="collapse-toggle" id="menuitem-4-3" type="checkbox"/><label class="tocitem" for="menuitem-4-3"><span class="docs-label">Sediment models</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../model_components/sediments/">Overview</a></li><li><a class="tocitem" href="../../model_components/sediments/simple_multi_g/">Simple Multi-G</a></li><li><a class="tocitem" href="../../model_components/sediments/instant_remineralisation/">Instant remineralisation</a></li></ul></li><li><a class="tocitem" href="../../model_components/light/">Light attenuation models</a></li><li><input class="collapse-toggle" id="menuitem-4-5" type="checkbox"/><label class="tocitem" for="menuitem-4-5"><span class="docs-label">Individuals</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../model_components/individuals/">Overview</a></li><li><a class="tocitem" href="../../model_components/individuals/slatissima/">Sugar Kelp (Broch and Slagstad 2012 ++)</a></li></ul></li><li><a class="tocitem" href="../../model_components/utils/">Utilities</a></li></ul></li><li><a class="tocitem" href="../../model_implementation/">Implementing new models</a></li><li><input class="collapse-toggle" id="menuitem-6" type="checkbox"/><label class="tocitem" for="menuitem-6"><span class="docs-label">Numerical implementation</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../numerical_implementation/positivity-preservation/">Positivity preservation</a></li></ul></li><li><a class="tocitem" href="../../visualization/">Visualization</a></li><li><a class="tocitem" href="../../contributing/">Contibutors guide</a></li><li><a class="tocitem" href="../../references/">References</a></li><li><input class="collapse-toggle" id="menuitem-10" type="checkbox" checked/><label class="tocitem" for="menuitem-10"><span class="docs-label">Appendix</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../library/">Library</a></li><li class="is-active"><a class="tocitem" href>Function index</a></li><li><input class="collapse-toggle" id="menuitem-10-3" type="checkbox"/><label class="tocitem" for="menuitem-10-3"><span class="docs-label">Parameters</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../../generated/Biogeochemistry_parameters/">Biogeochemistry</a></li><li><a class="tocitem" href="../../generated/Biogeochemistry_parameters/">Biogeochemistry</a></li><li><a class="tocitem" href="../../generated/SLatissima_parameters/">SLatissima</a></li><li><a class="tocitem" href="../../generated/TwoBandPhotosyntheticallyActiveRadiation_parameters/">TwoBandPhotosyntheticallyActiveRadiation</a></li><li><a class="tocitem" href="../../generated/SimpleMultiG_parameters/">SimpleMultiG</a></li><li><a class="tocitem" href="../../generated/InstantRemineralisation_parameters/">InstantRemineralisation</a></li><li><a class="tocitem" href="../../generated/OceanBioME.Boundaries.pCO₂_parameters/">OceanBioME.Boundaries.pCO₂</a></li><li><a class="tocitem" href="../../generated/CO₂ air-sea exchange_parameters/">CO₂ air-sea exchange</a></li><li><a class="tocitem" href="../../generated/O₂ air-sea exchange_parameters/">O₂ air-sea exchange</a></li></ul></li></ul></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><nav class="breadcrumb"><ul class="is-hidden-mobile"><li><a class="is-disabled">Appendix</a></li><li class="is-active"><a href>Function index</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Function index</a></li></ul></nav><div class="docs-right"><a class="docs-edit-link" href="https://github.com/OceanBioME/OceanBioME.jl/blob/main/docs/src/appendix/function_index.md" title="Edit on GitHub"><span class="docs-icon fab"></span><span class="docs-label is-hidden-touch">Edit on GitHub</span></a><a class="docs-settings-button fas fa-cog" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-sidebar-button fa fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a></div></header><article class="content" id="documenter-page"><h1 id="Index"><a class="docs-heading-anchor" href="#Index">Index</a><a id="Index-1"></a><a class="docs-heading-anchor-permalink" href="#Index" title="Permalink"></a></h1><ul><li><a href="../library/#OceanBioME.Boundaries"><code>OceanBioME.Boundaries</code></a></li><li><a href="../library/#OceanBioME.BoxModels"><code>OceanBioME.BoxModels</code></a></li><li><a href="../library/#OceanBioME.LOBSTERModel"><code>OceanBioME.LOBSTERModel</code></a></li><li><a href="../library/#OceanBioME.Light"><code>OceanBioME.Light</code></a></li><li><a href="../library/#OceanBioME.NPZDModel"><code>OceanBioME.NPZDModel</code></a></li><li><a href="../library/#OceanBioME.OceanBioME"><code>OceanBioME.OceanBioME</code></a></li><li><a href="../library/#OceanBioME.SLatissimaModel"><code>OceanBioME.SLatissimaModel</code></a></li><li><a href="../library/#OceanBioME.Biogeochemistry-Tuple{Any}"><code>OceanBioME.Biogeochemistry</code></a></li><li><a href="../library/#OceanBioME.Boundaries.GasExchange-Union{Tuple{}, Tuple{PCO}, Tuple{S}, Tuple{T}, Tuple{AP}, Tuple{AC}, Tuple{FT}, Tuple{βP}, Tuple{ScP}} where {ScP, βP, FT, AC, AP, T, S, PCO}"><code>OceanBioME.Boundaries.GasExchange</code></a></li><li><a href="../library/#OceanBioME.Boundaries.Sediments.InstantRemineralisation"><code>OceanBioME.Boundaries.Sediments.InstantRemineralisation</code></a></li><li><a href="../library/#OceanBioME.Boundaries.Sediments.InstantRemineralisation-Tuple{}"><code>OceanBioME.Boundaries.Sediments.InstantRemineralisation</code></a></li><li><a href="../library/#OceanBioME.Boundaries.Sediments.SimpleMultiG-Union{Tuple{}, Tuple{P4}, Tuple{P3}, Tuple{P2}, Tuple{P1}, Tuple{FT}} where {FT, P1, P2, P3, P4}"><code>OceanBioME.Boundaries.Sediments.SimpleMultiG</code></a></li><li><a href="../library/#OceanBioME.Boundaries.Sediments.SimpleMultiG"><code>OceanBioME.Boundaries.Sediments.SimpleMultiG</code></a></li><li><a href="../library/#OceanBioME.BoxModels.BoxModel-Union{Tuple{}, Tuple{C}, Tuple{TS}, Tuple{FT}, Tuple{B}} where {B, FT, TS, C}"><code>OceanBioME.BoxModels.BoxModel</code></a></li><li><a href="../library/#OceanBioME.BoxModels.SaveBoxModel"><code>OceanBioME.BoxModels.SaveBoxModel</code></a></li><li><a href="../library/#OceanBioME.LOBSTERModel.LOBSTER-Union{Tuple{}, Tuple{M}, Tuple{P}, Tuple{S}, Tuple{LA}, Tuple{FT}} where {FT, LA, S, P, M}"><code>OceanBioME.LOBSTERModel.LOBSTER</code></a></li><li><a href="../library/#OceanBioME.Light.TwoBandPhotosyntheticallyActiveRadiation-Union{Tuple{}, Tuple{SPAR}, Tuple{FT}} where {FT, SPAR}"><code>OceanBioME.Light.TwoBandPhotosyntheticallyActiveRadiation</code></a></li><li><a href="../library/#OceanBioME.NPZDModel.NutrientPhytoplanktonZooplanktonDetritus-Union{Tuple{}, Tuple{M}, Tuple{P}, Tuple{S}, Tuple{LA}, Tuple{FT}} where {FT, LA, S, P, M}"><code>OceanBioME.NPZDModel.NutrientPhytoplanktonZooplanktonDetritus</code></a></li><li><a href="../library/#OceanBioME.SLatissimaModel.SLatissima"><code>OceanBioME.SLatissimaModel.SLatissima</code></a></li><li><a href="../library/#OceanBioME.ScaleNegativeTracers-Tuple{Oceananigans.Biogeochemistry.AbstractBiogeochemistry}"><code>OceanBioME.ScaleNegativeTracers</code></a></li><li><a href="../library/#OceanBioME.ScaleNegativeTracers-Tuple{Any}"><code>OceanBioME.ScaleNegativeTracers</code></a></li><li><a href="../library/#OceanBioME.ZeroNegativeTracers"><code>OceanBioME.ZeroNegativeTracers</code></a></li><li><a href="../library/#OceanBioME.conserved_tracers-Tuple{Biogeochemistry}"><code>OceanBioME.conserved_tracers</code></a></li><li><a href="../library/#OceanBioME.redfield-NTuple{6, Any}"><code>OceanBioME.redfield</code></a></li><li><a href="../library/#OceanBioME.redfield-Tuple{Any, Any}"><code>OceanBioME.redfield</code></a></li><li><a href="../library/#Oceananigans.Fields.set!-Tuple{BoxModel}"><code>Oceananigans.Fields.set!</code></a></li><li><a href="../library/#Oceananigans.Simulations.run!-Tuple{BoxModel}"><code>Oceananigans.Simulations.run!</code></a></li></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../library/">« Library</a><a class="docs-footer-nextpage" href="../../generated/Biogeochemistry_parameters/">Biogeochemistry »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.25 on <span class="colophon-date" title="Friday 8 September 2023 10:52">Friday 8 September 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
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