Wrapper dev #24
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| name: Build and Run Docker | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| types: [opened, synchronize, edited] | |
| branches: | |
| - main | |
| - "docker/**" | |
| jobs: | |
| build-and-run-docker: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Generate input files | |
| run: | | |
| python -m Docker.generate_signal_docker_test | |
| - name: Verify input files | |
| run: | | |
| for file in ivim_simulation.nii.gz ivim_simulation.bval ivim_simulation.bvec; do | |
| if [ ! -f "$file" ]; then | |
| echo "Error: $file not found" | |
| exit 1 | |
| fi | |
| done | |
| echo "All input files generated successfully" | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build Docker image | |
| run: | | |
| docker build -t tf2.4_ivim-mri_codecollection -f Docker/Dockerfile . | |
| - name: Run Docker container | |
| run: | | |
| docker run --rm --name TF2.4_IVIM-MRI_CodeCollection \ | |
| -v ${{ github.workspace }}:/usr/src/app \ | |
| -v ${{ github.workspace }}:/usr/app/output \ | |
| tf2.4_ivim-mri_codecollection ivim_simulation.nii.gz ivim_simulation.bvec ivim_simulation.bval | |
| - name: Verify output files | |
| run: | | |
| for file in f.nii.gz dp.nii.gz d.nii.gz; do | |
| if [ ! -f "$file" ]; then | |
| echo "Error: $file not found" | |
| exit 1 | |
| fi | |
| done | |
| echo "All output files generated successfully" | |
| - name: Clean up artifacts and Docker image | |
| run: | | |
| docker rmi tf2.4_ivim-mri_codecollection || true | |
| rm -f tf2.4_ivim-mri_codecollection.tar.gz | |
| rm -f ${{ github.workspace }}/f.nii.gz | |
| rm -f ${{ github.workspace }}/dp.nii.gz | |
| rm -f ${{ github.workspace }}/d.nii.gz | |
| rm -f ${{ github.workspace }}/ivim_simulation.nii.gz | |
| rm -f ${{ github.workspace }}/ivim_simulation.bval | |
| rm -f ${{ github.workspace }}/ivim_simulation.bvec | |
| - name: Cleanup Docker | |
| run: | | |
| docker system prune -a --force |