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manual: fix more broken HTML tags (#4781)
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* manual: fix more broken HTML tags

In order to obtain a good result when converting the HTML manual pages files to markdown, ideally clean HTML code is used (continuation of #4765).

This PR fixes numerous broken HTML tags identified during a test run of [adding HTML validation with super-linter](echoix#303).

For reference, see logs showing the errors at
https://github.com/echoix/grass/actions/runs/12067630007/job/33651008404?pr=303

Fixes include:
- complete selected ncomplete tag pairs (esp. `<li>`)
- tabs replaced with white space
- `<`, `>`, `&` replaced with their HTML representations

* Apply suggestions from code review

---------

Co-authored-by: Edouard Choinière <[email protected]>
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neteler and echoix authored Nov 28, 2024
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2 changes: 1 addition & 1 deletion db/db.execute/db.execute.html
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Expand Up @@ -104,7 +104,7 @@ <h2>SEE ALSO</h2>
<p>
<em>
<a href="sql.html">GRASS SQL interface</a>
<em>
</em>

<h2>AUTHOR</h2>

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2 changes: 1 addition & 1 deletion db/drivers/ogr/grass-ogr.html
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Expand Up @@ -7,7 +7,7 @@ <h2>SEE ALSO</h2>

<em>
<a href="sql.html">SQL support in GRASS GIS</a>
<em>
</em>

<p>
<em>
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2 changes: 1 addition & 1 deletion general/g.parser/g.parser.html
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Expand Up @@ -523,7 +523,7 @@ <h3>Example code for Perl</h3>

if( $ARGV[0] ne '@ARGS_PARSED@' ){
my $arg = "";
for (my $i=0; $i < @ARGV;$i++) {
for (my $i=0; $i &lt; @ARGV;$i++) {
$arg .= " $ARGV[$i] ";
}
system("$ENV{GISBASE}/bin/g.parser $0 $arg");
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2 changes: 1 addition & 1 deletion general/g.proj/g.proj.html
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Expand Up @@ -137,7 +137,7 @@ <h3>Create projection (PRJ) file</h3>
Create a '.prj' file in ESRI format corresponding to the current project:<br>

<div class="code"><pre>
g.proj -wef > irish_grid.prj
g.proj -wef &gt; irish_grid.prj
</pre></div>

<h3>Read CRS from file</h3>
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18 changes: 9 additions & 9 deletions gui/wxpython/gmodeler/g.gui.gmodeler.html
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Expand Up @@ -107,15 +107,15 @@ <h3>Components of models</h3>
Different model elements are shown in the figures below.

<ul>
<li> (<font size="2" color="red">A</font>) raster data: <img src="g_gui_gmodeler_raster.png" alt="raster" style="margin: 0px 0px -5px 0px">
<li> (<font size="2" color="red">B</font>) relation: <img src="g_gui_gmodeler_relation.png" alt="relation" style="margin: 10px 0px 0px 0px">
<li> (<font size="2" color="red">C</font>) GRASS module: <img src="g_gui_gmodeler_modul.png" alt="module" style="margin: 0px 0px -5px 0px">
<li> (<font size="2" color="red">D</font>) loop: <img src="g_gui_gmodeler_loop.png" alt="loop" style="margin: 15px 0px -5px 0px">
<li> (<font size="2" color="red">E</font>) database table: <img src="g_gui_gmodeler_db.png" alt="db" style="margin: 10px 0px -5px 0px">
<li> (<font size="2" color="red">F</font>) 3D raster data: <img src="g_gui_gmodeler_raster3d.png" alt="raster3D" style="margin: 10px 0px -5px 0px">
<li> (<font size="2" color="red">G</font>) vector data: <img src="g_gui_gmodeler_vector.png" alt="vector" style="margin: 10px 0px -5px 0px">
<li> (<font size="2" color="red">H</font>) disabled GRASS module: <img src="g_gui_gmodeler_modulex.png" alt="module" style="margin: 10px 0px -5px 0px">
<li> (<font size="2" color="red">I</font>) comment: <img src="g_gui_gmodeler_comment.png" alt="comment" style="margin: 10px 0px -5px 0px">
<li> (<font size="2" color="red">A</font>) raster data: <img src="g_gui_gmodeler_raster.png" alt="raster" style="margin: 0px 0px -5px 0px"></li>
<li> (<font size="2" color="red">B</font>) relation: <img src="g_gui_gmodeler_relation.png" alt="relation" style="margin: 10px 0px 0px 0px"></li>
<li> (<font size="2" color="red">C</font>) GRASS module: <img src="g_gui_gmodeler_modul.png" alt="module" style="margin: 0px 0px -5px 0px"></li>
<li> (<font size="2" color="red">D</font>) loop: <img src="g_gui_gmodeler_loop.png" alt="loop" style="margin: 15px 0px -5px 0px"></li>
<li> (<font size="2" color="red">E</font>) database table: <img src="g_gui_gmodeler_db.png" alt="db" style="margin: 10px 0px -5px 0px"></li>
<li> (<font size="2" color="red">F</font>) 3D raster data: <img src="g_gui_gmodeler_raster3d.png" alt="raster3D" style="margin: 10px 0px -5px 0px"></li>
<li> (<font size="2" color="red">G</font>) vector data: <img src="g_gui_gmodeler_vector.png" alt="vector" style="margin: 10px 0px -5px 0px"></li>
<li> (<font size="2" color="red">H</font>) disabled GRASS module: <img src="g_gui_gmodeler_modulex.png" alt="module" style="margin: 10px 0px -5px 0px"></li>
<li> (<font size="2" color="red">I</font>) comment: <img src="g_gui_gmodeler_comment.png" alt="comment" style="margin: 10px 0px -5px 0px"></li>
</ul>

<center>
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2 changes: 1 addition & 1 deletion imagery/i.evapo.pm/i.evapo.pm.html
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Expand Up @@ -46,7 +46,7 @@ <h2>NOTES</h2>
<h2>REFERENCES</h2>

<p>[1] Cannata M., 2006. <a href="http://istgis.ist.supsi.ch:8001/geomatica/index.php?id=1">
GIS embedded approach for Free & Open Source Hydrological Modelling</a>. PhD thesis, Department of Geodesy and Geomatics, Polytechnic of Milan, Italy.
GIS embedded approach for Free &amp; Open Source Hydrological Modelling</a>. PhD thesis, Department of Geodesy and Geomatics, Polytechnic of Milan, Italy.

<p>[2] Allen, R.G., L.S. Pereira, D. Raes, and M. Smith. 1998.
Crop Evapotranspiration: Guidelines for computing crop water requirements.
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8 changes: 4 additions & 4 deletions imagery/imageryintro.html
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Expand Up @@ -76,10 +76,10 @@ <h3>Image processing in general</h3>
As a general rule in GRASS:
<ol>
<li> Raster/imagery output maps have their bounds and resolution equal
to those of the current region.
to those of the current region.</li>
<li> Raster/imagery input maps are automatically cropped/padded and
rescaled (using nearest-neighbor resampling) to match the current
region.
region.</li>
</ol>


Expand Down Expand Up @@ -207,12 +207,12 @@ <h3>Image classification</h3>
<li> Combined radiometric/geometric (segmentation based) classification:
<ul>
<li> Supervised classification (<a href="i.gensigset.html">i.gensigset</a>,
<a href="i.smap.html">i.smap</a>)
<a href="i.smap.html">i.smap</a>)</li>
</ul>
<li> Object-oriented classification:
<ul>
<li> Unsupervised classification (segmentation based:
<a href="i.segment.html">i.segment</a>)
<a href="i.segment.html">i.segment</a>)</li>
</ul>
</ul>

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2 changes: 1 addition & 1 deletion mswindows/external/rbatch/README.html
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Expand Up @@ -2,7 +2,7 @@
<h1>Batchfiles</h1>

<p>
Home Page: <A href="http://batchfiles.googlecode.com">batchfiles home page</a>.
Home Page: <a href="http://batchfiles.googlecode.com">batchfiles home page</a>.
<p>
Discuss: <a href="http://groups.google.com/group/sqldf">sqldf dicussion group</a> is being used for discussion of this software too.
<p>
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4 changes: 2 additions & 2 deletions ps/ps.map/ps.map.html
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Expand Up @@ -48,7 +48,7 @@ <h2>NOTES</h2>
encoding, for example by using the <tt>iconv</tt> utility:

<div class="code"><pre>
iconv -f UTF-8 -t ISO_8859-1 utf_file > iso_file
iconv -f UTF-8 -t ISO_8859-1 utf_file &gt; iso_file
</pre></div>


Expand Down Expand Up @@ -1498,7 +1498,7 @@ <h2>EXAMPLES</h2>
</pre></div>

<center>
<img src=ps_map_basic.png>
<img src="ps_map_basic.png">
<p><em>Figure: Result of for the a simple Wake county terrain and roads example</em></p>
</center>

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6 changes: 3 additions & 3 deletions python/grass/docs/_templates/oholosidebar.html
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@@ -1,9 +1,9 @@
<p width="210px">
<iframe src='http://www.ohloh.net/p/3666/widgets/project_factoids_stats.html' scrolling='no' marginHeight=0 marginWidth=0 style='height: 160px; width: 210px; border: none;'></iframe>
<iframe src="https://openhub.net/p/3666/widgets/project_factoids_stats.html" scrolling="no" marginheight="0" marginwidth="0" style="height: 160px; width: 210px; border: none;"></iframe>
</p>
<p width="210px">
<iframe src='http://www.ohloh.net/p/3666/widgets/project_languages.html' scrolling='no' marginHeight=0 marginWidth=0 style='height: 160px; width: 210px; border: none;'></iframe>
<iframe src="https://openhub.net/p/3666/widgets/project_languages.html" scrolling="no" marginheight="0" marginwidth="0" style="height: 160px; width: 210px; border: none;"></iframe>
</p>
<p width="210px">
<iframe src='http://www.ohloh.net/p/3666/widgets/project_cocomo.html' scrolling='no' marginHeight=0 marginWidth=0 style='height: 160px; width: 210px; border: none;'></iframe>
<iframe src="https://openhub.net/p/3666/widgets/project_cocomo.html" scrolling="no" marginheight="0" marginwidth="0" style="height: 160px; width: 210px; border: none;"></iframe>
</p>
2 changes: 1 addition & 1 deletion raster/r.fill.dir/r.fill.dir.html
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Expand Up @@ -133,7 +133,7 @@ <h2>EXAMPLES</h2>
r.univar -e elev_lid792_1m_diff

# vectorize filled areas (here all fills are of positive value, see r.univar output)
r.mapcalc "elev_lid792_1m_fill_area = if(elev_lid792_1m_diff > 0.0, 1, null() )"
r.mapcalc "elev_lid792_1m_fill_area = if(elev_lid792_1m_diff &gt; 0.0, 1, null() )"
r.to.vect input=elev_lid792_1m_fill_area output=elev_lid792_1m_fill_area type=area

# generate shaded terrain for better visibility of results
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2 changes: 1 addition & 1 deletion raster/r.geomorphon/r.geomorphon.html
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Expand Up @@ -103,7 +103,7 @@ <h3>Forms represented by geomorphons:</h3>
<dt><b>profileformat</b></dt>
<dd>Format of the profile data: "json", "yaml" or "xml".</dd>
</dl>
<P><em>NOTE: parameters below are experimental. The usefulness of these parameters are currently under investigation.</em></P>
<p><em>NOTE: parameters below are experimental. The usefulness of these parameters are currently under investigation.</em></p>
<dl>
<dt><b>intensity</b></dt>
<dd>returns average difference between central cell of geomorphon and eight cells in visibility neighbourhood. This parameter shows local (as is visible) exposition/abasement of the form in the terrain.</dd>
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2 changes: 1 addition & 1 deletion raster/r.gwflow/r.gwflow.html
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Expand Up @@ -95,7 +95,7 @@ <h2>EXAMPLE</h2>
#now create the input raster maps for confined and unconfined aquifers
r.mapcalc expression="phead = if(row() == 1 , 50, 40)"
r.mapcalc expression="status = if(row() == 1 , 2, 1)"
r.mapcalc expression="well = if(row() == 20 && col() == 20 , -0.01, 0)"
r.mapcalc expression="well = if(row() == 20 &amp;&amp; col() == 20 , -0.01, 0)"
r.mapcalc expression="hydcond = 0.00025"
r.mapcalc expression="recharge = 0"
r.mapcalc expression="top_conf = 20.0"
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2 changes: 1 addition & 1 deletion raster/r.in.gdal/r.in.gdal.html
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Expand Up @@ -162,7 +162,7 @@ <h3>Support for Ground Control Points</h3>
If the <b>target</b> project does not exist, a new project will be
created matching the CRS definition of the GCPs. The target of
the output group will be set to the new project, and
<a href=i.rectify.html>i.rectify</a> can now be used without any further
<a href="i.rectify.html">i.rectify</a> can now be used without any further
preparation.
<p>
Some satellite images (e.g. NOAA/AVHRR, ENVISAT) can contain hundreds
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4 changes: 2 additions & 2 deletions raster/r.in.lidar/r.in.lidar.html
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Expand Up @@ -554,11 +554,11 @@ <h2>KNOWN ISSUES</h2>
<li>The "<tt>nan</tt>" value (as defined in C language) can leak into
<em>coeff_var</em> raster maps. Cause is unknown. Possible
work-around is: <tt>r.null setnull=nan</tt> or
<tt>r.mapcalc 'no_nan = if(map == map, map, null())'</tt>.
<tt>r.mapcalc 'no_nan = if(map == map, map, null())'</tt>.</li>
<li>Only one method can be applied for a single run and multiple map
output from a single run
(e.g. <tt>method=string[,string,...] output=name[,name,...]</tt>
or <tt>n=string mean=string</tt>) is no supported.
or <tt>n=string mean=string</tt>) is no supported.</li>
<!-- not really:
<li> Merge with r.in.xyz.
-->
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2 changes: 1 addition & 1 deletion raster/r.in.xyz/r.in.xyz.html
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Expand Up @@ -212,7 +212,7 @@ <h3>Import of x,y,z ASCII into DEM</h3>
<!-- NC: preparation for this example
g.region raster=elevation res=15 -p
#
r.stats -1g elevation > elevation.xyz
r.stats -1g elevation &gt; elevation.xyz
-->

<div class="code"><pre>
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12 changes: 6 additions & 6 deletions raster/r.li/r.li.edgedensity/r.li.edgedensity.html
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Expand Up @@ -3,12 +3,12 @@ <h2>DESCRIPTION</h2>
<em>r.li.edgedensity </em>calculates:<br>
<br>
<ul>
<li> the density of all edges of patch type <em>k</em>
<img alt="r.li.edgedensity formula 1" src="r_li_edgedensity_formula_1.png">
, or
<li> the density of all edges in the sampling area if <em>k</em> is
not specified,
<img alt="r.li.edgedensity formula 2" src="r_li_edgedensity_formula_2.png">
<li> the density of all edges of patch type <em>k</em>
<img alt="r.li.edgedensity formula 1" src="r_li_edgedensity_formula_1.png">
, or</li>
<li> the density of all edges in the sampling area if <em>k</em> is
not specified,
<img alt="r.li.edgedensity formula 2" src="r_li_edgedensity_formula_2.png"></li>
</ul>
<p>with:
<ul>
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64 changes: 33 additions & 31 deletions raster/r.li/r.li.html
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Expand Up @@ -61,48 +61,50 @@ <h2>EXAMPLES</h2>

<ol>
<li> CREATE A NEW CONFIGURATION FILE
<ol>
<li> run
<ol>
<li> run
<div class="code"><pre>
g.gui.rlisetup
</pre></div></li>
<li> The main <em>g.gui.rlisetup</em> window is displayed, click on "New"</li>
<li> The new configuration window is now displayed, enter the<br>
configuration file name (e.g., "my_conf", do not use absolute paths)<br><br>

Now the new configuration window is displayed.<br>
Enter the configuration file name (e.g., "my_conf", do not use absolute paths)<br>
and the name of raster map (e.g., "geology").<br>
The other fields are not needed for this configuration.</li>
<li> Click on "Setup sampling frame", select "Whole map layer" and click "OK"</li>
<li> Click on "Setup sampling areas", select "Moving window" and click "OK"</li>
<li> Click on "Use keyboard to enter moving window dimension"</li>
<li> Select "Rectangle" and enter 5 in the "height" and "width" fields</li>
<li> Click on "Save settings"</li>
<li> Close the <em>g.gui.rlisetup</em> window</li>
</ol>
g.gui.rlisetup
</pre></div>
</li>
<li> The main <em>g.gui.rlisetup</em> window is displayed, click on "New"</li>
<li> The new configuration window is now displayed, enter the<br>
configuration file name (e.g., "my_conf", do not use absolute paths)
<br><br>
Now the new configuration window is displayed.<br>
Enter the configuration file name (e.g., "my_conf", do not use absolute paths)<br>
and the name of raster map (e.g., "geology").<br>
The other fields are not needed for this configuration.</li>
<li> Click on "Setup sampling frame", select "Whole map layer" and click "OK"</li>
<li> Click on "Setup sampling areas", select "Moving window" and click "OK"</li>
<li> Click on "Use keyboard to enter moving window dimension"</li>
<li> Select "Rectangle" and enter 5 in the "height" and "width" fields</li>
<li> Click on "Save settings"</li>
<li> Close the <em>g.gui.rlisetup</em> window</li>
</ol></li>

<li> CALCULATE PATCHDENSITY INDEX
<ol>
<li> set the region settings to the "<tt>geology</tt>" raster map:
<ol>
<li> set the region settings to the "<tt>geology</tt>" raster map:
<div class="code"><pre>
g.region raster=geology -p
</pre></div></li>

<li> run <em>r.li.patchdensity</em>:
g.region raster=geology -p
</pre></div>
</li>
<li> run <em>r.li.patchdensity</em>:
<div class="code"><pre>
r.li.patchdensity input=geology conf=my_conf out=patchdens
</pre></div></li>
</ol>
r.li.patchdensity input=geology conf=my_conf out=patchdens
</pre></div>
</li>
</ol></li>
</ol>

The resulting patch density is stored in "<tt>patchdens</tt>" raster map.

You can verify the result for example with contour lines:
<div class="code"><pre>
r.contour in=patchdens out=patchdens step=5
d.rast patchdens
d.vect -c patchdens
r.contour in=patchdens out=patchdens step=5
d.rast patchdens
d.vect -c patchdens
</pre></div>

Note that if you want to run another index with the same area
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2 changes: 1 addition & 1 deletion raster/r.li/r.li.patchdensity/r.li.patchdensity.html
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Expand Up @@ -44,7 +44,7 @@ <h2>EXAMPLES</h2>
g.region raster=landcover.30m -p
# extract forested areas:
r.category landcover.30m
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43, 1, null())"
r.mapcalc "forests = if(landcover.30m &gt;= 41 &amp;&amp; landcover.30m &lt;= 43, 1, null())"

# patch density (7x7 moving window defined in g.gui.rlisetup):
r.li.patchdensity forests conf=movwindow7 out=forests_p_dens7
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2 changes: 1 addition & 1 deletion raster/r.profile/r.profile.html
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Expand Up @@ -88,7 +88,7 @@ <h3>Extraction of values along profile defined by coordinates (variant 1)</h3>
<p>First create a points file with <em><a href="d.where.html">d.where</a></em>
<div class="code"><pre>
d.where > saved.points
d.where &gt; saved.points
</pre></div>
Then pipe the points file into r.profile
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2 changes: 1 addition & 1 deletion raster/r.solute.transport/r.solute.transport.html
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Expand Up @@ -108,7 +108,7 @@ <h2>EXAMPLE</h2>
gs.run_command("r.mapcalc", expression="phead = if(col() == 1 , 50, 40)")
gs.run_command("r.mapcalc", expression="phead = if(col() ==200 , 45 + row()/40, phead)")
gs.run_command("r.mapcalc", expression="status = if(col() == 1 || col() == 200 , 2, 1)")
gs.run_command("r.mapcalc", expression="well = if((row() == 50 && col() == 175) || (row() == 10 && col() == 135) , -0.001, 0)")
gs.run_command("r.mapcalc", expression="well = if((row() == 50 &amp;&amp; col() == 175) || (row() == 10 &amp;&amp; col() == 135) , -0.001, 0)")
gs.run_command("r.mapcalc", expression="hydcond = 0.00005")
gs.run_command("r.mapcalc", expression="recharge = 0")
gs.run_command("r.mapcalc", expression="top_conf = 20")
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2 changes: 1 addition & 1 deletion raster/r.texture/r.texture.html
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Expand Up @@ -330,7 +330,7 @@ <h2>REFERENCES</h2>
<li>Haralick, R. (May 1979). <i>Statistical and structural approaches to texture</i>,
Proceedings of the IEEE, vol. 67, No.5, pp. 786-804</li>
<li>Hall-Beyer, M. (2007). <a href="http://www.fp.ucalgary.ca/mhallbey/tutorial.htm">The GLCM Tutorial Home Page</a>
(Grey-Level Co-occurrence Matrix texture measurements). University of Calgary, Canada
(Grey-Level Co-occurrence Matrix texture measurements). University of Calgary, Canada</li>
</ul>

<h2>SEE ALSO</h2>
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2 changes: 1 addition & 1 deletion raster/r.thin/r.thin.html
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Expand Up @@ -71,7 +71,7 @@ <h2>EXAMPLE</h2>
# create flow accumulation map
r.watershed elevation=elevation accumulation=accum_50K thresh=50000
# extract streams from flow accumulation map
r.mapcalc "streams_from_flow = if(abs(accum_50K) &gt;> 1000, 1, null())"
r.mapcalc "streams_from_flow = if(abs(accum_50K) &gt; 1000, 1, null())"

# skeletonize map
r.thin streams_from_flow out=streams_thin
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4 changes: 2 additions & 2 deletions raster/r.timestamp/r.timestamp.html
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Expand Up @@ -21,8 +21,8 @@ <h2>TIMESTAMP FORMAT</h2>
<p>There are two types of datetime values:

<ul>
<li><em>absolute</em> and
<li><em>relative</em>.
<li><em>absolute</em> and</li>
<li><em>relative</em>.</li>
</ul>

Absolute values specify exact dates and/or times. Relative values
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6 changes: 3 additions & 3 deletions raster/r.viewshed/r.viewshed.html
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Expand Up @@ -161,10 +161,10 @@ <h3>The algorithm</h3>


<p>
<table width=50% align=center>
<table width="50%" align="center">
<tr>
<th><img src="sweep1.png" width=200 alt="[SDF]" border="0"></th>
<th><img src="sweep2.png" width=200 alt="[SDF]" border="0"></th>
<th><img src="sweep1.png" width="200" alt="[SDF]" border="0"></th>
<th><img src="sweep2.png" width="200" alt="[SDF]" border="0"></th>
</tr>
<tr>
<th>The sweep-line.</th>
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6 changes: 3 additions & 3 deletions raster3d/r3.flow/r3.flow.html
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Expand Up @@ -54,9 +54,9 @@ <h2>EXAMPLES</h2>
g.region res=25 res3=25 t=100 b=0 n=1000 s=0 w=0 e=1000 -p3

# now create the input raster maps for a confined aquifer
r3.mapcalc expression="phead = if(row() == 1 && depth() == 4, 50, 40)"
r3.mapcalc expression="status = if(row() == 1 && depth() == 4, 2, 1)"
r3.mapcalc expression="well = if(row() == 20 && col() == 20 && depth() == 2, -0.25, 0)"
r3.mapcalc expression="phead = if(row() == 1 &amp;&amp; depth() == 4, 50, 40)"
r3.mapcalc expression="status = if(row() == 1 &amp;&amp; depth() == 4, 2, 1)"
r3.mapcalc expression="well = if(row() == 20 &amp;&amp; col() == 20 &amp;&amp; depth() == 2, -0.25, 0)"
r3.mapcalc expression="hydcond = 0.00025"
r3.mapcalc expression="syield = 0.0001"
r.mapcalc expression="recharge = 0.0"
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2 changes: 1 addition & 1 deletion raster3d/r3.in.ascii/r3.in.ascii.html
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ <h2>NOTES</h2>
ordering in the ASCII input file:
<center>
<img src="raster3d_layout.png" border="0"><br>
<table border="0" width=700>
<table border="0" width="700">
<tr><td><center>
<i>The volume coordinate system and tile layout of the imported voxel map</i>
</center></td></tr>
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