Merge branch 'main' into v_perturb-non-points

OSGeo · Nov 1, 2024 · 442083f · 442083f
2 parents 23745d9 + 3f0b69f
commit 442083f
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diff --git a/.coveragerc b/.coveragerc
@@ -9,6 +9,7 @@ omit =
     ${INITIAL_PWD-.}/.github/*
     ${INITIAL_PWD-.}/bin.*/*
     ${INITIAL_PWD-.}/dist.*/*
+    **/gui/wxpython/*/**
     **/OBJ.*/*
 source =
     .

diff --git a/.flake8 b/.flake8
@@ -15,76 +15,18 @@ per-file-ignores =
     # E501 line too long
     # E722 do not use bare 'except'
     # W605 invalid escape sequence
-    # F401 imported but unused
     # F821 undefined name 'unicode'
     # F841 local variable assigned to but never used
     # E741 ambiguous variable name 'l'
-    __init__.py: F401, F403
-    lib/init/grass.py: E722, F821, F841
-    man/build_check_rest.py: F403, F405
-    man/build_full_index_rest.py: F403, F405
-    man/parser_standard_options.py: F403, F405
-    man/build_class.py: F403, F405
-    man/build_class_rest.py: F403, F405
-    man/build_check.py: F403, F405
-    man/build_full_index.py: F403, F405
-    man/build_index.py: F403, F405
-    man/build_index_rest.py: F403, F405
-    man/build_keywords.py: F403, F405, E722
-    man/build_topics.py: F403, F405, E722
+    __init__.py: F403
     man/build_html.py: E501
-    imagery/i.atcorr/create_iwave.py: F632, F821, W293
-    doc/python/raster_example_ctypes.py: F403, F405
-    doc/python/vector_example_ctypes.py: F403, F405
-    doc/python/m.distance.py: F403, F405, E501
-    doc/gui/wxpython/example/dialogs.py: F401
-    locale/grass_po_stats.py: E122, E128, E231, E401, E722
+    doc/python/m.distance.py: E501
     gui/scripts/d.wms.py: E501
-    gui/wxpython/core/gcmd.py: E402
-    gui/wxpython/core/gthread.py: F841
-    gui/wxpython/core/gconsole.py: E722
-    gui/wxpython/core/toolboxes.py: E722
-    gui/wxpython/core/utils.py: E722, F841
-    gui/wxpython/core/workspace.py: E722
-    gui/wxpython/core/render.py: E722, F841
-    gui/wxpython/core/ws.py: F841
-    gui/wxpython/core/settings.py: E722
-    gui/wxpython/core/watchdog.py: E402
-    gui/wxpython/datacatalog/tree.py: E731, E402
-    gui/wxpython/dbmgr/base.py: E722
-    gui/wxpython/dbmgr/dialogs.py: E722
-    gui/wxpython/dbmgr/sqlbuilder.py: E722
-    gui/wxpython/dbmgr/manager.py: E722
-    gui/wxpython/docs/wxgui_sphinx/conf.py: E402, W291
-    gui/wxpython/gcp/g.gui.gcp.py: F841
-    gui/wxpython/gcp/manager.py: F841, E722
-    gui/wxpython/gcp/mapdisplay.py: F841
-    gui/wxpython/gui_core/*: F841, E266, E722
-    gui/wxpython/gui_core/dialogs.py: E722, F841
-    gui/wxpython/gui_core/forms.py: E722, F841
-    gui/wxpython/gui_core/ghelp.py: E722
-    gui/wxpython/gui_core/gselect.py: F841, E266, E722
-    gui/wxpython/gui_core/preferences.py: E266, F841
-    gui/wxpython/gui_core/treeview.py: F841
-    gui/wxpython/gui_core/widgets.py: F841, E722, E266
-    gui/wxpython/image2target/*: F841, E722, E265
-    gui/wxpython/image2target/g.gui.image2target.py: E501, E265, F841
-    gui/wxpython/iscatt/*: F841, E722, F405, F403
-    gui/wxpython/lmgr/frame.py: F841, E722
-    # layertree still includes some formatting issues (it is ignored by Black)
-    gui/wxpython/lmgr/layertree.py: E722, E266, W504, E225
-    gui/wxpython/lmgr/workspace.py: F841
-    gui/wxpython/modules/*: F841, E722
-    gui/wxpython/nviz/*: F841, E266, E722, F403, F405
-    gui/wxpython/photo2image/*: F841, E722, E265
-    gui/wxpython/photo2image/g.gui.photo2image.py: E501, F841
-    gui/wxpython/psmap/*: F841, E266, E722, F405, F403
+    gui/wxpython/image2target/g.gui.image2target.py: E501
+    gui/wxpython/photo2image/g.gui.photo2image.py: E501
+    gui/wxpython/psmap/*: E501, E722
     gui/wxpython/vdigit/*: F841, E722, F405, F403
-    gui/wxpython/vnet/*: F841
-    gui/wxpython/wxgui.py: F841
     gui/wxpython/animation/g.gui.animation.py: E501
-    gui/wxpython/animation/mapwindow.py: F841
-    gui/wxpython/animation/provider.py: F841
     gui/wxpython/tplot/frame.py: F841, E722
     gui/wxpython/tplot/g.gui.tplot.py: E501
     gui/wxpython/rdigit/g.gui.rdigit.py: F841
@@ -120,12 +62,9 @@ per-file-ignores =
     # TODO: Is this really needed?
     python/grass/pygrass/vector/__init__.py: E402
     python/grass/pygrass/raster/__init__.py: E402
-    python/grass/gunittest/invoker.py: E721
     python/grass/pygrass/vector/__init__.py: E402
-    python/grass/pygrass/modules/interface/*.py: F401
-    python/grass/pygrass/modules/grid/*.py: F401
     python/grass/pygrass/raster/category.py: E721
-    python/grass/pygrass/rpc/__init__.py: F401, F403
+    python/grass/pygrass/rpc/__init__.py: F403
     python/grass/pygrass/utils.py: E402
     python/grass/temporal/abstract_space_time_dataset.py: E722
     python/grass/temporal/c_libraries_interface.py: E722
@@ -136,47 +75,35 @@ per-file-ignores =
     python/grass/temporal/temporal_granularity.py: E722
     python/grass/temporal/temporal_raster_base_algebra.py: E722
     python/grass/temporal/temporal_topology_dataset_connector.py: E722
-    python/grass/temporal/univar_statistics.py: E231
     # Current benchmarks/tests are changing sys.path before import.
     # Possibly, a different approach should be taken there anyway.
-    python/grass/pygrass/tests/benchmark.py: E402, F401, F821
+    python/grass/pygrass/tests/benchmark.py: E402, F821
     # Configuration file for Sphinx:
     # Ignoring import/code mix and line length.
-    python/grass/docs/conf.py: E402
     # Files not managed by Black
     python/grass/imaging/images2gif.py: E226
     # Unused imports in init files
-    # F401 imported but unused
     # F403 star import used; unable to detect undefined names
     python/grass/*/__init__.py: F401, F403
-    python/grass/*/*/__init__.py: F401, F403
-    python/grass/*/*/*/__init__.py: F401, F403
+    python/grass/*/*/__init__.py: F403
+    python/grass/*/*/*/__init__.py: F403
     # E402 module level import not at top of file
     scripts/r.in.wms/wms_gdal_drv.py: E722
     scripts/r.in.wms/wms_drv.py: E402, E722
     scripts/r.in.wms/srs.py: E722
     scripts/r.semantic.label/r.semantic.label.py: E501
-    scripts/v.report/v.report.py: E721
     scripts/db.out.ogr/db.out.ogr.py: F841
-    scripts/g.extension/g.extension.py: F841, E722, E501
-    scripts/v.unpack/v.unpack.py: E722, E501
-    scripts/v.import/v.import.py: E722, E501
+    scripts/g.extension/g.extension.py: E501
+    scripts/v.unpack/v.unpack.py: E501n
+    scripts/v.import/v.import.py: E501
     scripts/db.univar/db.univar.py: E501
-    scripts/d.frame/d.frame.py: E722
-    scripts/i.pansharpen/i.pansharpen.py: E722, E501
-    scripts/r.in.srtm/r.in.srtm.py: E722
-    scripts/r.fillnulls/r.fillnulls.py: E722
-    scripts/d.rast.edit/d.rast.edit.py: E722
-    scripts/v.what.strds/v.what.strds.py: E722, E501
+    scripts/i.pansharpen/i.pansharpen.py: E501
+    scripts/v.what.strds/v.what.strds.py: E501
     # Line too long (esp. module interface definitions)
     scripts/*/*.py: E501
-    # local variable 'column' is assigned to but never used
     temporal/t.rast.to.vect/t.rast.to.vect.py: E501
-    # local variable 'stdstype' is assigned to but never used
-    temporal/t.vect.algebra/t.vect.algebra.py: F841, E501
-    # ## used (##% key: r etc)
-    # local variable 'map_list' is assigned to but never used
-    temporal/t.rast.what/t.rast.what.py: E265, E266, F841, E501
+    temporal/t.vect.algebra/t.vect.algebra.py: E501
+    temporal/t.rast.what/t.rast.what.py: E501
     # Line too long (esp. module interface definitions)
     temporal/*/*.py: E501
 

diff --git a/.github/actions/create-upload-suggestions/action.yml b/.github/actions/create-upload-suggestions/action.yml
@@ -177,7 +177,7 @@ runs:
         echo "diff-file-name=${INPUT_DIFF_FILE_NAME}" >> "${GITHUB_OUTPUT}"
       env:
         INPUT_DIFF_FILE_NAME: ${{ steps.tool-name-safe.outputs.diff-file-name }}
-    - uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874 # v4.4.0
+    - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3
       id: upload-diff
       if: >-
         ${{ (steps.files_changed.outputs.files_changed == 'true') &&
@@ -200,7 +200,7 @@ runs:
           echo 'Suggestions can only be added near to lines changed in this PR.'
           echo 'If any fixes can be added as code suggestions, they will be added shortly from another workflow.'
         } >> "${GITHUB_STEP_SUMMARY}"
-    - uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874 # v4.4.0
+    - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3
       id: upload-changes
       if: >-
         ${{ always() &&

diff --git a/.github/labeler.yml b/.github/labeler.yml
@@ -123,9 +123,7 @@ docs:
               - '**/*.png'
               - '**.cff'
               - CITING
-              - CHANGES
               - AUTHORS
-              - NEWS
               - TODO
           - all-globs-to-all-files:
               - '!doc/development/rfc/**'

diff --git a/.github/workflows/additional_checks.yml b/.github/workflows/additional_checks.yml
@@ -24,7 +24,7 @@ jobs:
 
     steps:
       - name: Checkout repository contents
-        uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
         with:
           fetch-depth: 31
 
@@ -43,7 +43,7 @@ jobs:
           exclude: mswindows .*\.bat .*/testsuite/data/.*
 
       - name: Set up Python
-        uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3 # v5.2.0
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
         with:
           python-version: '3.10'
 

diff --git a/.github/workflows/apt.txt b/.github/workflows/apt.txt
@@ -7,8 +7,8 @@ libfftw3-dev
 libgdal-dev
 libgl1-mesa-dev
 libglu1-mesa-dev
+liblapacke-dev
 libnetcdf-dev
-libopenblas-dev
 libpdal-dev
 libpng-dev
 libproj-dev

diff --git a/.github/workflows/clang-format-check.yml b/.github/workflows/clang-format-check.yml
@@ -16,7 +16,7 @@ jobs:
     name: Formatting Check
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
         with:
           persist-credentials: false
       - uses: DoozyX/clang-format-lint-action@c71d0bf4e21876ebec3e5647491186f8797fde31 # v0.18.2

diff --git a/.github/workflows/codeql-analysis.yml b/.github/workflows/codeql-analysis.yml
@@ -40,9 +40,9 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
       - name: Set up Python
-        uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3 # v5.2.0
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
         with:
           python-version: '3.x'
       - name: Install non-Python dependencies
@@ -52,11 +52,11 @@ jobs:
           sudo apt-get install -y wget git gawk findutils
           xargs -a <(awk '! /^ *(#|$)/' ".github/workflows/apt.txt") -r -- \
               sudo apt-get install -y --no-install-recommends --no-install-suggests
-      - uses: rui314/setup-mold@0bf4f07ef9048ec62a45f9dbf2f098afa49695f0 # v1
+      - uses: rui314/setup-mold@b015f7e3f2938ad3a5ed6e5111a8c6c7c1d6db6e # v1
         if: ${{ matrix.language == 'c-cpp' }}
 
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@4dd16135b69a43b6c8efb853346f8437d92d3c93 # v3.26.6
+        uses: github/codeql-action/init@662472033e021d55d94146f66f6058822b0b39fd # v3.27.0
         with:
           languages: ${{ matrix.language }}
           config-file: ./.github/codeql/codeql-config.yml
@@ -81,6 +81,6 @@ jobs:
         run: .github/workflows/build_ubuntu-22.04.sh "${HOME}/install"
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@4dd16135b69a43b6c8efb853346f8437d92d3c93 # v3.26.6
+        uses: github/codeql-action/analyze@662472033e021d55d94146f66f6058822b0b39fd # v3.27.0
         with:
           category: "/language:${{matrix.language}}"
diff --git a/.github/workflows/coverity.yml b/.github/workflows/coverity.yml
@@ -17,7 +17,7 @@ jobs:
     runs-on: ubuntu-22.04
     if: github.repository == 'OSGeo/grass'
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
       - name: Get dependencies
         run: |

diff --git a/.github/workflows/create_release_draft.yml b/.github/workflows/create_release_draft.yml
@@ -30,12 +30,12 @@ jobs:
       contents: write
     steps:
       - name: Checks-out repository
-        uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
         with:
           ref: ${{ github.ref }}
           fetch-depth: 0
       - name: Set up Python
-        uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3 # v5.2.0
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
         with:
           python-version: '3.11'
       - name: Create output directory
@@ -73,7 +73,7 @@ jobs:
           sha256sum ${{ env.GRASS }}.tar.xz > ${{ env.GRASS }}.tar.xz.sha256
       - name: Publish draft distribution to GitHub (for tags only)
         if: startsWith(github.ref, 'refs/tags/')
-        uses: softprops/action-gh-release@c062e08bd532815e2082a85e87e3ef29c3e6d191 # v2.0.8
+        uses: softprops/action-gh-release@e7a8f85e1c67a31e6ed99a94b41bd0b71bbee6b8 # v2.0.9
         with:
           name: GRASS GIS ${{ github.ref_name }}
           body: |

diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
@@ -49,7 +49,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
         with:
           fetch-depth: 0
       - name: Docker meta
@@ -68,15 +68,15 @@ jobs:
       - name: Set up QEMU
         uses: docker/setup-qemu-action@49b3bc8e6bdd4a60e6116a5414239cba5943d3cf # v3.2.0
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@988b5a0280414f521da01fcc63a27aeeb4b104db # v3.6.1
+        uses: docker/setup-buildx-action@c47758b77c9736f4b2ef4073d4d51994fabfe349 # v3.7.1
       - name: Login to DockerHub
         uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567 # v3.3.0
         with:
           username: ${{ secrets.DOCKERHUB_USERNAME }}
           password: ${{ secrets.DOCKERHUB_TOKEN  }}
       - name: Build and push
         id: docker_build
-        uses: docker/build-push-action@5cd11c3a4ced054e52742c5fd54dca954e0edd85 # v6.7.0
+        uses: docker/build-push-action@4f58ea79222b3b9dc2c8bbdd6debcef730109a75 # v6.9.0
         with:
           push: true
           pull: true

diff --git a/.github/workflows/gcc.yml b/.github/workflows/gcc.yml
@@ -26,7 +26,7 @@ jobs:
       fail-fast: false
 
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
       - name: Get dependencies
         run: |
           sudo apt-get update -y