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Adding missing fields to stem table definitions for CDM v5.3.1 and v6…
….0.0. Should prevent #155
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rabbitinahat/src/main/resources/org/ohdsi/rabbitInAHat/dataModel/StemTableV5.3.1.csv
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|---|---|---|
| @@ -1,44 +1,46 @@ | ||
| "TABLE_NAME,COLUMN_NAME,IS_NULLABLE,DATA_TYPE,DESCRIPTION" | ||
| "STEM_TABLE,DOMAIN_ID,NO,CHARACTER VARYING,A foreign key idenfifying the domain this event belongs to. The domain drives the target CDM table this event will be recorded in. If one is not set specify a default domain." | ||
| "STEM_TABLE,PERSON_ID,NO,INTEGER,A foreign key identifier to the Person. The demographic details of that Person are stored in the PERSON table." | ||
| "STEM_TABLE,VISIT_OCCURRENCE_ID,YES,INTEGER,A foreign key to the visit in the VISIT table." | ||
| "STEM_TABLE,PROVIDER_ID,YES,INTEGER,A foreign key to the Provider in the PROVIDER table who was responsible for capturing this event." | ||
| "STEM_TABLE,ID,NO,INTEGER,A unique identifier for identifying the event." | ||
| "STEM_TABLE,CONCEPT_ID,NO,INTEGER,A foreign key that refers to a Standard Condition Concept identifier in the Standardized Vocabularies." | ||
| "STEM_TABLE,SOURCE_VALUE,YES,CHARACTER VARYING,The source code for the Concept as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is stored here for reference." | ||
| "STEM_TABLE,SOURCE_CONCEPT_ID,YES,INTEGER,A foreign key to a Concept that refers to the code used in the source." | ||
| "STEM_TABLE,TYPE_CONCEPT_ID,NO,INTEGER,""A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the source data from which the event was recorded, the level of standardization, and the type of occurrence.""" | ||
| "STEM_TABLE,START_DATE,NO,DATE,The start date of the event." | ||
| "STEM_TABLE,START_DATETIME,YES,DATETIME,The start datetime of the event." | ||
| "STEM_TABLE,END_DATE,YES,DATE,The end date of the event." | ||
| "STEM_TABLE,END_DATETIME,YES,DATETIME,The end datetime of the event." | ||
| "STEM_TABLE,VERBATIM_END_DATE,YES,DATE,The verbatim end date (not derived) of the event." | ||
| "STEM_TABLE,DAYS_SUPPLY,YES,INTEGER,The number of days of supply of the medication as recorded in the original prescription or dispensing record." | ||
| "STEM_TABLE,DOSE_UNIT_SOURCE_VALUE,YES,CHARACTER VARYING,The information about the dose unit as detailed in the source." | ||
| "STEM_TABLE,LOT_NUMBER,YES,CHARACTER VARYING,An identifier assigned to a particular quantity or lot of Drug product from the manufacturer." | ||
| "STEM_TABLE,MODIFIER_CONCEPT_ID,YES,INTEGER,A foreign key to a Standard Concept identifier for a modifier to the Procedure (e.g. bilateral)" | ||
| "STEM_TABLE,OPERATOR_CONCEPT_ID,YES,INTEGER,""A foreign key identifier to the predefined Concept in the Standardized Vocabularies reflecting the mathematical operator that is applied to the value_as_number. Operators are <, ?, =, ?, >.""" | ||
| "STEM_TABLE,MODIFIER_CONCEPT_ID,YES,INTEGER,""A foreign key to a Standard Concept ID for a modifier (e.g., severity of drug-drug interaction alert)""" | ||
| "STEM_TABLE,MODIFIER_SOURCE_VALUE,YES,CHARACTER VARYING,The source code for the modifier as it appears in the source data." | ||
| "STEM_TABLE,QUANTITY,YES,INTEGER,The number of individual Devices/Procedures/Drugs used for the exposure." | ||
| "STEM_TABLE,RANGE_HIGH,YES,FLOAT,The upper limit of the normal range of the Measurement. The upper range is assumed to be of the same unit of measure as the Measurement value." | ||
| "STEM_TABLE,RANGE_LOW,YES,FLOAT,The lower limit of the normal range of the Measurement result. The lower range is assumed to be of the same unit of measure as the Measurement value." | ||
| "STEM_TABLE,REFILLS,YES,INTEGER,""The number of refills after the initial prescription. The initial prescription is not counted, values start with 0.""" | ||
| "STEM_TABLE,ROUTE_CONCEPT_ID,YES,INTEGER,A foreign key to a predefined concept in the Standardized Vocabularies reflecting the route of administration." | ||
| "STEM_TABLE,ROUTE_SOURCE_VALUE,YES,CHARACTER VARYING,The information about the route of administration as detailed in the source." | ||
| "STEM_TABLE,SIG,YES,CHARACTER VARYING,The directions (�signetur�) on the Drug prescription as recorded in the original prescription (and printed on the container) or dispensing record." | ||
| "STEM_TABLE,STOP_REASON,YES,CHARACTER VARYING,""The reason that the condition was no longer present or the drug exposure stopped, as indicated in the source data.""" | ||
| "STEM_TABLE,UNIQUE_DEVICE_ID,YES,CHARACTER VARYING,A UDI or equivalent identifying the instance of the Device used in the Person." | ||
| "STEM_TABLE,UNIT_CONCEPT_ID,YES,INTEGER,A foreign key to a predefined concept in the Standardized Vocabularies reflecting the unit the effective_drug_dose/measurement/observation/specimen value is expressed." | ||
| "STEM_TABLE,UNIT_SOURCE_VALUE,YES,CHARACTER VARYING,The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is stored here for reference." | ||
| "STEM_TABLE,VALUE_AS_CONCEPT_ID,YES,INTEGER,""A foreign key to a result represented as a Concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.).""" | ||
| "STEM_TABLE,VALUE_AS_NUMBER,YES,DECIMAL,A result where the result is expressed as a numeric value." | ||
| "STEM_TABLE,VALUE_AS_STRING,YES,CHARACTER VARYING,The result stored as a string. This is applicable where the result is expressed as verbatim text." | ||
| "STEM_TABLE,VALUE_SOURCE_VALUE,YES,CHARACTER VARYING,The source value associated with the content of the value_as_number or value_as_concept as stored in the source data." | ||
| "STEM_TABLE,ANATOMIC_SITE_CONCEPT_ID,YES,INTEGER,A foreign key to a Standard Concept identifier for the anatomic location of specimen collection." | ||
| "STEM_TABLE,DISEASE_STATUS_CONCEPT_ID,YES,INTEGER,A foreign key to a Standard Concept identifier for the Disease Status of specimen collection." | ||
| "STEM_TABLE,SPECIMEN_SOURCE_ID,YES,INTEGER,The Specimen identifier as it appears in the source data." | ||
| "STEM_TABLE,ANATOMIC_SITE_SOURCE_VALUE,YES,CHARACTER VARYING,The information about the anatomic site as detailed in the source." | ||
| "STEM_TABLE,DISEASE_STATUS_SOURCE_VALUE,YES,CHARACTER VARYING,The information about the disease status as detailed in the source." | ||
| "STEM_TABLE,CONDITION_STATUS_CONCEPT_ID,YES,CHARACTER VARYING,A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the condition_status." | ||
| "STEM_TABLE,CONDITION_STATUS_SOURCE_VALUE,YES,INTEGER,The source code as it appears in the source data" | ||
| TABLE_NAME,COLUMN_NAME,IS_NULLABLE,DATA_TYPE,DESCRIPTION | ||
| STEM_TABLE,DOMAIN_ID,NO,CHARACTER VARYING,"A foreign key idenfifying the domain this event belongs to. The domain drives the target CDM table this event will be recorded in. If one is not set specify a default domain." | ||
| STEM_TABLE,PERSON_ID,NO,INTEGER,"A foreign key identifier to the Person. The demographic details of that Person are stored in the PERSON table." | ||
| STEM_TABLE,VISIT_OCCURRENCE_ID,YES,INTEGER,"A foreign key to the visit in the VISIT table." | ||
| STEM_TABLE,PROVIDER_ID,YES,INTEGER,"A foreign key to the Provider in the PROVIDER table who was responsible for capturing this event." | ||
| STEM_TABLE,ID,NO,INTEGER,"A unique identifier for identifying the event." | ||
| STEM_TABLE,CONCEPT_ID,NO,INTEGER,"A foreign key that refers to a Standard Condition Concept identifier in the Standardized Vocabularies." | ||
| STEM_TABLE,SOURCE_VALUE,YES,CHARACTER VARYING,"The source code for the Concept as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is stored here for reference." | ||
| STEM_TABLE,SOURCE_CONCEPT_ID,YES,INTEGER,"A foreign key to a Concept that refers to the code used in the source." | ||
| STEM_TABLE,TYPE_CONCEPT_ID,NO,INTEGER,"A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the source data from which the event was recorded, the level of standardization, and the type of occurrence." | ||
| STEM_TABLE,START_DATE,NO,DATE,"The start date of the event." | ||
| STEM_TABLE,START_DATETIME,YES,DATETIME,"The start datetime of the event." | ||
| STEM_TABLE,END_DATE,YES,DATE,"The end date of the event." | ||
| STEM_TABLE,END_DATETIME,YES,DATETIME,"The end datetime of the event." | ||
| STEM_TABLE,VERBATIM_END_DATE,YES,DATE,"The verbatim end date (not derived) of the event." | ||
| STEM_TABLE,DAYS_SUPPLY,YES,INTEGER,"The number of days of supply of the medication as recorded in the original prescription or dispensing record." | ||
| STEM_TABLE,DOSE_UNIT_SOURCE_VALUE,YES,CHARACTER VARYING,"The information about the dose unit as detailed in the source." | ||
| STEM_TABLE,LOT_NUMBER,YES,CHARACTER VARYING,"An identifier assigned to a particular quantity or lot of Drug product from the manufacturer." | ||
| STEM_TABLE,MODIFIER_CONCEPT_ID,YES,INTEGER,"A foreign key to a Standard Concept identifier for a modifier to the Procedure (e.g. bilateral)" | ||
| STEM_TABLE,OPERATOR_CONCEPT_ID,YES,INTEGER,"A foreign key identifier to the predefined Concept in the Standardized Vocabularies reflecting the mathematical operator that is applied to the value_as_number. Operators are <, ?, =, ?, >." | ||
| STEM_TABLE,MODIFIER_CONCEPT_ID,YES,INTEGER,"A foreign key to a Standard Concept ID for a modifier (e.g., severity of drug-drug interaction alert)" | ||
| STEM_TABLE,MODIFIER_SOURCE_VALUE,YES,CHARACTER VARYING,"The source code for the modifier as it appears in the source data." | ||
| STEM_TABLE,QUANTITY,YES,INTEGER,"The number of individual Devices/Procedures/Drugs used for the exposure." | ||
| STEM_TABLE,RANGE_HIGH,YES,FLOAT,"The upper limit of the normal range of the Measurement. The upper range is assumed to be of the same unit of measure as the Measurement value." | ||
| STEM_TABLE,RANGE_LOW,YES,FLOAT,"The lower limit of the normal range of the Measurement result. The lower range is assumed to be of the same unit of measure as the Measurement value." | ||
| STEM_TABLE,REFILLS,YES,INTEGER,"The number of refills after the initial prescription. The initial prescription is not counted, values start with 0." | ||
| STEM_TABLE,ROUTE_CONCEPT_ID,YES,INTEGER,"A foreign key to a predefined concept in the Standardized Vocabularies reflecting the route of administration." | ||
| STEM_TABLE,ROUTE_SOURCE_VALUE,YES,CHARACTER VARYING,"The information about the route of administration as detailed in the source." | ||
| STEM_TABLE,SIG,YES,CHARACTER VARYING,"The directions (�signetur�) on the Drug prescription as recorded in the original prescription (and printed on the container) or dispensing record." | ||
| STEM_TABLE,STOP_REASON,YES,CHARACTER VARYING,"The reason that the condition was no longer present or the drug exposure stopped, as indicated in the source data." | ||
| STEM_TABLE,UNIQUE_DEVICE_ID,YES,CHARACTER VARYING,"A UDI or equivalent identifying the instance of the Device used in the Person." | ||
| STEM_TABLE,UNIT_CONCEPT_ID,YES,INTEGER,"A foreign key to a predefined concept in the Standardized Vocabularies reflecting the unit the effective_drug_dose/measurement/observation/specimen value is expressed." | ||
| STEM_TABLE,UNIT_SOURCE_VALUE,YES,CHARACTER VARYING,"The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is stored here for reference." | ||
| STEM_TABLE,VALUE_AS_CONCEPT_ID,YES,INTEGER,"A foreign key to a result represented as a Concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.)." | ||
| STEM_TABLE,VALUE_AS_NUMBER,YES,DECIMAL,"A result where the result is expressed as a numeric value." | ||
| STEM_TABLE,VALUE_AS_STRING,YES,CHARACTER VARYING,"The result stored as a string. This is applicable where the result is expressed as verbatim text." | ||
| STEM_TABLE,VALUE_SOURCE_VALUE,YES,CHARACTER VARYING,"The source value associated with the content of the value_as_number or value_as_concept as stored in the source data." | ||
| STEM_TABLE,ANATOMIC_SITE_CONCEPT_ID,YES,INTEGER,"A foreign key to a Standard Concept identifier for the anatomic location of specimen collection." | ||
| STEM_TABLE,DISEASE_STATUS_CONCEPT_ID,YES,INTEGER,"A foreign key to a Standard Concept identifier for the Disease Status of specimen collection." | ||
| STEM_TABLE,SPECIMEN_SOURCE_ID,YES,INTEGER,"The Specimen identifier as it appears in the source data." | ||
| STEM_TABLE,ANATOMIC_SITE_SOURCE_VALUE,YES,CHARACTER VARYING,"The information about the anatomic site as detailed in the source." | ||
| STEM_TABLE,DISEASE_STATUS_SOURCE_VALUE,YES,CHARACTER VARYING,"The information about the disease status as detailed in the source." | ||
| STEM_TABLE,CONDITION_STATUS_CONCEPT_ID,YES,CHARACTER VARYING,"A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the condition_status." | ||
| STEM_TABLE,CONDITION_STATUS_SOURCE_VALUE,YES,INTEGER,"The source code as it appears in the source data" | ||
| STEM_TABLE,QUALIFIER_CONCEPT_ID,YES,INTEGER,"A foreign key to a Standard Concept ID for a qualifier (e.g., severity of drug-drug interaction alert)" | ||
| STEM_TABLE,QUALIFIER_SOURCE_VALUE,YES,CHARACTER VARYING,"The source value associated with a qualifier to characterize the observation" |
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