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{2023.06}[foss/2022a] RepeatMasker V4.1.4 #207

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{2023.06}[foss/2022a] RepeatMasker V4.1.4 #207

wants to merge 1 commit into from

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TopRichard
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Trying to build RepeatMasker/4.1.4-foss/2022a as a step forward for getting closer to the current available HPC software stack.

Will install the following packages:

* TRF/4.09.1-GCCcore-11.3.0 (TRF-4.09.1-GCCcore-11.3.0.eb)
* LMDB/0.9.29-GCCcore-11.3.0 (LMDB-0.9.29-GCCcore-11.3.0.eb)
* Boost.MPI/1.79.0-gompi-2022a (Boost.MPI-1.79.0-gompi-2022a.eb)
* HMMER/3.3.2-gompi-2022a (HMMER-3.3.2-gompi-2022a.eb)
* RMBlast/2.13.0-gompi-2022a (RMBlast-2.13.0-gompi-2022a.eb)
* RepeatMasker/4.1.4-foss-2022a (RepeatMasker-4.1.4-foss-2022a.eb)

@nessi-bot
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nessi-bot bot commented Oct 12, 2023

Instance Fram-NESSI is configured to build:

  • arch x86_64/generic for repo nessi-2022.11-swl-deb10
  • arch x86_64/generic for repo nessi-2023.06-cl
  • arch x86_64/generic for repo nessi-2023.06-swl-deb10
  • arch x86_64/generic for repo nessi-2023.06-swl-deb11
  • arch x86_64/intel/broadwell for repo nessi-2022.11-swl-deb10
  • arch x86_64/intel/broadwell for repo nessi-2023.06-cl
  • arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
  • arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

@nessi-bot
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nessi-bot bot commented Oct 12, 2023

Instance Saga-NESSI is configured to build:

  • arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
  • arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
  • arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
  • arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
  • arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
  • arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
  • arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
  • arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
  • arch x86_64/generic for repo nessi-2022.11-swl-deb10
  • arch x86_64/generic for repo nessi-2023.06-cl
  • arch x86_64/generic for repo nessi-2023.06-swl-deb10
  • arch x86_64/generic for repo nessi-2023.06-swl-deb11

@nessi-bot
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nessi-bot bot commented Oct 12, 2023

Instance eX3-NESSI is configured to build:

  • arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
  • arch x86_64/amd/zen2 for repo nessi-2023.06-cl
  • arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
  • arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
  • arch aarch64/generic for repo nessi-2022.11-swl-deb10
  • arch aarch64/generic for repo nessi-2023.06-cl
  • arch aarch64/generic for repo nessi-2023.06-swl-deb10
  • arch aarch64/generic for repo nessi-2023.06-swl-deb11

@nessi-bot
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nessi-bot bot commented Oct 12, 2023

Instance AWS-NESSI is configured to build:

  • arch x86_64/generic for repo nessi-2022.11-swl-deb10
  • arch x86_64/generic for repo nessi-2023.06-cl
  • arch x86_64/generic for repo nessi-2023.06-swl-deb10
  • arch x86_64/generic for repo nessi-2023.06-swl-deb11
  • arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
  • arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
  • arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
  • arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
  • arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
  • arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
  • arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
  • arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
  • arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
  • arch x86_64/amd/zen2 for repo nessi-2023.06-cl
  • arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
  • arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
  • arch aarch64/generic for repo nessi-2022.11-swl-deb10
  • arch aarch64/generic for repo nessi-2023.06-cl
  • arch aarch64/generic for repo nessi-2023.06-swl-deb10
  • arch aarch64/generic for repo nessi-2023.06-swl-deb11

@TopRichard
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bot: build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake

@nessi-bot
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nessi-bot bot commented Oct 12, 2023 •
edited
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Updates by the bot instance eX3-NESSI (click for details)

  • received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard

    • expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake

  • handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:

    • no jobs were submitted

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:

    • no jobs were submitted

@nessi-bot
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nessi-bot bot commented Oct 12, 2023 •
edited
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Updates by the bot instance Saga-NESSI (click for details)

  • received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard

    • expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake

  • handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:

    • no jobs were submitted

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:

    • no jobs were submitted

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:

@nessi-bot
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nessi-bot bot commented Oct 12, 2023 •
edited
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Updates by the bot instance Fram-NESSI (click for details)

  • received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard

    • expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake

  • handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:

    • no jobs were submitted

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:

    • no jobs were submitted

@nessi-bot
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nessi-bot bot commented Oct 12, 2023 •
edited
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Updates by the bot instance AWS-NESSI (click for details)

  • received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard

    • expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2

  • received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard

    • expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake

  • handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:

    • no jobs were submitted

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:

    • no jobs were submitted

  • handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:

    • no jobs were submitted

@nessi-bot
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nessi-bot bot commented Oct 12, 2023 •
edited
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New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_207/15156

date job status comment
Oct 12 06:57:45 PM UTC 2023 submitted job id 15156 awaits release by job manager
Oct 12 07:02:45 PM UTC 2023 released job awaits launch by Slurm scheduler
Oct 12 07:07:50 PM UTC 2023 running job 15156 is running
Oct 12 07:53:05 PM UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-15156.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1697140000.tar.gzsize: 42 MiB (44989176 bytes)
entries: 17132
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
Boost.MPI/1.79.0-gompi-2022a.lua
HMMER/3.3.2-gompi-2022a.lua
LMDB/0.9.29-GCCcore-11.3.0.lua
TRF/4.09.1-GCCcore-11.3.0.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
Boost.MPI/1.79.0-gompi-2022a
HMMER/3.3.2-gompi-2022a
LMDB/0.9.29-GCCcore-11.3.0
TRF/4.09.1-GCCcore-11.3.0
other under 2023.06/software/linux/x86_64/amd/zen2
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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nessi-bot bot commented Oct 12, 2023 •
edited
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New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_207/5430358

date job status comment
Oct 12 18:58:11 UTC 2023 submitted job id 5430358 awaits release by job manager
Oct 12 18:59:39 UTC 2023 released job awaits launch by Slurm scheduler
Oct 12 19:04:42 UTC 2023 running job 5430358 is running
Oct 12 20:10:02 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-5430358.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-broadwell-1697141242.tar.gzsize: 42 MiB (45032902 bytes)
entries: 17132
modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all
Boost.MPI/1.79.0-gompi-2022a.lua
HMMER/3.3.2-gompi-2022a.lua
LMDB/0.9.29-GCCcore-11.3.0.lua
TRF/4.09.1-GCCcore-11.3.0.lua
software under 2023.06/software/linux/x86_64/intel/broadwell/software
Boost.MPI/1.79.0-gompi-2022a
HMMER/3.3.2-gompi-2022a
LMDB/0.9.29-GCCcore-11.3.0
TRF/4.09.1-GCCcore-11.3.0
other under 2023.06/software/linux/x86_64/intel/broadwell
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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nessi-bot bot commented Oct 12, 2023 •
edited
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New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_207/15157

date job status comment
Oct 12 06:57:49 PM UTC 2023 submitted job id 15157 awaits release by job manager
Oct 12 07:02:43 PM UTC 2023 released job awaits launch by Slurm scheduler
Oct 12 07:07:48 PM UTC 2023 running job 15157 is running
Oct 12 07:12:53 PM UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-15157.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1697137619.tar.gzsize: 0 MiB (230551 bytes)
entries: 25
modules under 2023.06/software/linux/aarch64/generic/modules/all
TRF/4.09.1-GCCcore-11.3.0.lua
software under 2023.06/software/linux/aarch64/generic/software
TRF/4.09.1-GCCcore-11.3.0
other under 2023.06/software/linux/aarch64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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nessi-bot bot commented Oct 12, 2023 •
edited
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New job on instance Saga-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_207/9641638

date job status comment
Oct 12 06:58:27 PM UTC 2023 submitted job id 9641638 awaits release by job manager
Oct 12 06:58:31 PM UTC 2023 released job awaits launch by Slurm scheduler
Oct 12 07:03:36 PM UTC 2023 running job 9641638 is running
Oct 12 07:54:04 PM UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-9641638.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-cascadelake-1697140282.tar.gzsize: 42 MiB (44867853 bytes)
entries: 17132
modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all
Boost.MPI/1.79.0-gompi-2022a.lua
HMMER/3.3.2-gompi-2022a.lua
LMDB/0.9.29-GCCcore-11.3.0.lua
TRF/4.09.1-GCCcore-11.3.0.lua
software under 2023.06/software/linux/x86_64/intel/cascadelake/software
Boost.MPI/1.79.0-gompi-2022a
HMMER/3.3.2-gompi-2022a
LMDB/0.9.29-GCCcore-11.3.0
TRF/4.09.1-GCCcore-11.3.0
other under 2023.06/software/linux/x86_64/intel/cascadelake
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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nessi-bot bot commented Oct 12, 2023 •
edited
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New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_207/9641639

date job status comment
Oct 12 06:58:41 PM UTC 2023 submitted job id 9641639 awaits release by job manager
Oct 12 07:03:34 PM UTC 2023 released job awaits launch by Slurm scheduler
Oct 12 07:08:39 PM UTC 2023 running job 9641639 is running
Oct 12 08:19:14 PM UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-9641639.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1697141893.tar.gzsize: 42 MiB (44899646 bytes)
entries: 17132
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
Boost.MPI/1.79.0-gompi-2022a.lua
HMMER/3.3.2-gompi-2022a.lua
LMDB/0.9.29-GCCcore-11.3.0.lua
TRF/4.09.1-GCCcore-11.3.0.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
Boost.MPI/1.79.0-gompi-2022a
HMMER/3.3.2-gompi-2022a
LMDB/0.9.29-GCCcore-11.3.0
TRF/4.09.1-GCCcore-11.3.0
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

@TopRichard TopRichard closed this Jan 29, 2024
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@TopRichard @trz42