{2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206

TopRichard · 2023-10-12T13:49:43Z

Trying to build SRA-Toolkit/3.0.3-gompi/2022a as a step forward for getting closer to the current available HPC software stack.

Will install the following packages:

* Perl/5.34.1-GCCcore-11.3.0-minimal (Perl-5.34.1-GCCcore-11.3.0-minimal.eb)
* file/5.43-GCCcore-11.3.0 (file-5.43-GCCcore-11.3.0.eb)
* ncbi-vdb/3.0.2-gompi-2022a (ncbi-vdb-3.0.2-gompi-2022a.eb)
* SRA-Toolkit/3.0.3-gompi-2022a (SRA-Toolkit-3.0.3-gompi-2022a.eb)

nessi-bot · 2023-10-12T13:49:48Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-12T13:49:48Z

Instance AWS-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-12T13:49:49Z

Instance Fram-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2022.11-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-12T13:49:49Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

TopRichard · 2023-10-12T13:50:16Z

bot: build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake

nessi-bot · 2023-10-12T13:50:19Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 15065, for details & status see {2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 15066, for details & status see {2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-12T13:50:19Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- submitted job 5430255, for details & status see {2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-12T13:50:19Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- submitted job 9640860, for details & status see {2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 9640861, for details & status see {2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206 (comment)

nessi-bot · 2023-10-12T13:50:19Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-12T13:50:24Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_206/15065

date	job status	comment
Oct 12 01:49:57 PM UTC 2023	submitted	job id `15065` awaits release by job manager
Oct 12 01:52:16 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 12 01:57:22 PM UTC 2023	running	job `15065` is running
Oct 12 02:07:27 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-15065.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1697119539.tar.gz` size: 191 MiB (200397173 bytes) entries: 3917 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `file/5.43-GCCcore-11.3.0.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `file/5.43-GCCcore-11.3.0` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-12T13:50:25Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_206/5430255

date	job status	comment
Oct 12 13:50:24 UTC 2023	submitted	job id `5430255` awaits release by job manager
Oct 12 13:54:15 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 12 13:59:18 UTC 2023	running	job `5430255` is running
Oct 12 14:14:23 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5430255.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1697119982.tar.gz` size: 190 MiB (200248786 bytes) entries: 3917 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `file/5.43-GCCcore-11.3.0.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `file/5.43-GCCcore-11.3.0` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-12T13:50:30Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_206/15066

date	job status	comment
Oct 12 01:50:03 PM UTC 2023	submitted	job id `15066` awaits release by job manager
Oct 12 01:52:14 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 12 01:57:19 PM UTC 2023	running	job `15066` is running
Oct 12 02:22:32 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-15066.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1697120134.tar.gz` size: 185 MiB (194759876 bytes) entries: 3917 modules under 2023.06/software/linux/aarch64/generic/modules/all `file/5.43-GCCcore-11.3.0.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/aarch64/generic/software `file/5.43-GCCcore-11.3.0` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-12T13:50:56Z

New job on instance Saga-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_206/9640860

Couldn't find file file-5.43.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /cvmfs/pilot.nessi.no/versions/2023.06/software/linux/x86_64/intel/cascadelake/software/EasyBuild/4.8.1/easybuild/easyconfigs/f/file/f/file/file-5.43.tar.gz, /cvmfs/pilot.nessi.no/versi")

date	job status	comment
Oct 12 01:50:54 PM UTC 2023	submitted	job id `9640860` awaits release by job manager
Oct 12 01:51:27 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 12 01:56:33 PM UTC 2023	running	job `9640860` is running
Oct 12 02:06:48 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-9640860.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1697119355.tar.gz` size: 31 MiB (32701850 bytes) entries: 3424 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-12T13:51:17Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_206/9640861

Couldn't find file file-5.43.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /cvmfs/pilot.nessi.no/versions/2023.06/software/linux/x86_64/intel/cascadelake/software/EasyBuild/4.8.1/easybuild/easyconfigs/f/file/f/file/file-5.43.tar.gz, /cvmfs/pilot.nessi.no/versi")

date	job status	comment
Oct 12 01:51:16 PM UTC 2023	submitted	job id `9640861` awaits release by job manager
Oct 12 01:51:23 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 12 01:56:35 PM UTC 2023	running	job `9640861` is running
Oct 12 02:06:50 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-9640861.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1697119491.tar.gz` size: 31 MiB (32705393 bytes) entries: 3424 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

TopRichard · 2023-10-16T09:49:04Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake

nessi-bot · 2023-10-16T09:49:07Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 56, for details & status see {2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206 (comment)

nessi-bot · 2023-10-16T09:49:07Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-16T09:49:07Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-16T09:49:08Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-16T09:49:12Z

New job on instance AWS-MC-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2023.10/pr_206/56

date	job status	comment
Oct 16 09:49:11 UTC 2023	submitted	job id `56` awaits release by job manager
Oct 16 09:50:10 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 16 09:55:13 UTC 2023	running	job `56` is running
Oct 16 10:14:36 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-56.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1697451172.tar.gz` size: 190 MiB (200192088 bytes) entries: 3917 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `file/5.43-GCCcore-11.3.0.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `file/5.43-GCCcore-11.3.0` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

….3-gompi/2022a

TopRichard · 2024-01-10T09:30:14Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic

nessi-bot · 2024-01-10T09:30:18Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 3831, for details & status see {2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206 (comment)

nessi-bot · 2024-01-10T09:30:18Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-01-10T09:30:18Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-01-10T09:30:22Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.01/pr_206/3831

date	job status	comment
Jan 10 09:30:21 UTC 2024	submitted	job id `3831` awaits release by job manager
Jan 10 09:30:28 UTC 2024	released	job awaits launch by Slurm scheduler
Jan 10 09:35:30 UTC 2024	running	job `3831` is running
Jan 10 09:58:21 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-3831.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1704880642.tar.gz` size: 187 MiB (196850868 bytes) entries: 3917 modules under 2023.06/software/linux/x86_64/generic/modules/all `file/5.43-GCCcore-11.3.0.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/generic/software `file/5.43-GCCcore-11.3.0` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

trz42 · 2024-01-10T09:53:17Z

Is fully contained by #197. If that builds successfully we can close this.

{2023.06}[gompi/2022a] SRA-Toolkit V3.0.3

d47cbe8

TopRichard added the NESSI/2023.06 label Oct 12, 2023

Merge branch 'nessi.no-2023.06' into nessi.no-2023.06-SRA-Toolkit/3.0…

ce24ed4

….3-gompi/2022a

TopRichard closed this Jan 11, 2024

TopRichard deleted the nessi.no-2023.06-SRA-Toolkit/3.0.3-gompi/2022a branch January 11, 2024 10:39

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{2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206

{2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206

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trz42 commented Jan 10, 2024

{2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206

{2023.06}[gompi/2022a] SRA-Toolkit V3.0.3 #206

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