{2023.06}[gompi/2022a] HISAT2 V2.2.1 #197

TopRichard · 2023-10-09T07:23:33Z

Trying to build HISAT2/2.2.1-gompi/2022a as a step forward for getting closer to the current available HPC software stack.
License: https://spdx.org/licenses/GPL-3.0-only.html
Will install the following packages:

* Perl/5.34.1-GCCcore-11.3.0-minimal (Perl-5.34.1-GCCcore-11.3.0-minimal.eb)
* file/5.43-GCCcore-11.3.0 (file-5.43-GCCcore-11.3.0.eb)
* ncbi-vdb/3.0.2-gompi-2022a (ncbi-vdb-3.0.2-gompi-2022a.eb)
* SRA-Toolkit/3.0.3-gompi-2022a (SRA-Toolkit-3.0.3-gompi-2022a.eb)
* HISAT2/2.2.1-gompi-2022a (HISAT2-2.2.1-gompi-2022a.eb)

nessi-bot · 2023-10-09T07:23:37Z

Instance AWS-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-09T07:23:37Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-09T07:23:37Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-09T07:23:37Z

Instance Fram-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2022.11-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

TopRichard · 2023-10-09T07:25:15Z

bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2
bot: build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake

nessi-bot · 2023-10-09T07:25:17Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- submitted job 5425624, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-09T07:25:17Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- submitted job 9602659, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 9602660, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)

nessi-bot · 2023-10-09T07:25:17Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 14145, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-09T07:25:18Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 7897, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- submitted job 7898, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-09T07:25:24Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_197/14145

date	job status	comment
Oct 09 07:24:58 AM UTC 2023	submitted	job id `14145` awaits release by job manager
Oct 09 07:27:01 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:32:03 AM UTC 2023	running	job `14145` is running
Oct 09 08:49:33 AM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14145.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696837930.tar.gz` size: 185 MiB (194772821 bytes) entries: 3917 modules under 2023.06/software/linux/aarch64/generic/modules/all `file/5.43-GCCcore-11.3.0.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/aarch64/generic/software `file/5.43-GCCcore-11.3.0` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-09T07:25:25Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_197/5425624

date	job status	comment
Oct 09 07:25:24 UTC 2023	submitted	job id `5425624` awaits release by job manager
Oct 09 07:29:44 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:34:49 UTC 2023	running	job `5425624` is running
Oct 09 07:55:01 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5425624.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696837806.tar.gz` size: 195 MiB (205173423 bytes) entries: 4016 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `file/5.43-GCCcore-11.3.0.lua` `HISAT2/2.2.1-gompi-2022a.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `file/5.43-GCCcore-11.3.0` `HISAT2/2.2.1-gompi-2022a` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-09T07:25:25Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_197/7897

date	job status	comment
Oct 09 07:25:24 AM UTC 2023	submitted	job id `7897` awaits release by job manager
Oct 09 07:26:15 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:30:20 AM UTC 2023	running	job `7897` is running
Oct 09 07:57:53 AM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7897.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696838086.tar.gz` size: 192 MiB (201693021 bytes) entries: 4016 modules under 2023.06/software/linux/x86_64/generic/modules/all `file/5.43-GCCcore-11.3.0.lua` `HISAT2/2.2.1-gompi-2022a.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/generic/software `file/5.43-GCCcore-11.3.0` `HISAT2/2.2.1-gompi-2022a` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-09T07:25:30Z

New job on instance Saga-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_197/9602659

date	job status	comment
Oct 09 07:25:29 AM UTC 2023	submitted	job id `9602659` awaits release by job manager
Oct 09 07:29:01 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:34:10 AM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-9602659.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.

nessi-bot · 2023-10-09T07:25:33Z

New job on instance AWS-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb10 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_197/7898

date	job status	comment
Oct 09 07:25:32 AM UTC 2023	submitted	job id `7898` awaits release by job manager
Oct 09 07:26:13 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:30:18 AM UTC 2023	running	job `7898` is running
Oct 09 08:00:01 AM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7898.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696838240.tar.gz` size: 195 MiB (205339859 bytes) entries: 4016 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `file/5.43-GCCcore-11.3.0.lua` `HISAT2/2.2.1-gompi-2022a.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `file/5.43-GCCcore-11.3.0` `HISAT2/2.2.1-gompi-2022a` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-09T07:25:39Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_197/9602660

date	job status	comment
Oct 09 07:25:38 AM UTC 2023	submitted	job id `9602660` awaits release by job manager
Oct 09 07:28:59 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:34:08 AM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-9602660.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.

TopRichard · 2023-10-09T07:37:01Z

bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake
bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake

nessi-bot · 2023-10-09T07:37:04Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-09T07:37:04Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-09T07:37:04Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- submitted job 7901, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 7902, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)

nessi-bot · 2023-10-09T07:37:04Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-09T07:37:11Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_197/7901

date	job status	comment
Oct 09 07:37:10 AM UTC 2023	submitted	job id `7901` awaits release by job manager
Oct 09 07:38:38 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:43:01 AM UTC 2023	running	job `7901` is running
Oct 09 08:06:22 AM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7901.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696838669.tar.gz` size: 195 MiB (205081769 bytes) entries: 4016 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `file/5.43-GCCcore-11.3.0.lua` `HISAT2/2.2.1-gompi-2022a.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `file/5.43-GCCcore-11.3.0` `HISAT2/2.2.1-gompi-2022a` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-09T07:37:18Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_197/7902

date	job status	comment
Oct 09 07:37:17 AM UTC 2023	submitted	job id `7902` awaits release by job manager
Oct 09 07:38:35 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 09 07:42:59 AM UTC 2023	running	job `7902` is running
Oct 09 08:06:20 AM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7902.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696838626.tar.gz` size: 195 MiB (205096150 bytes) entries: 4016 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `file/5.43-GCCcore-11.3.0.lua` `HISAT2/2.2.1-gompi-2022a.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `file/5.43-GCCcore-11.3.0` `HISAT2/2.2.1-gompi-2022a` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

TopRichard · 2023-10-25T07:29:18Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake

nessi-bot · 2023-10-25T07:29:21Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 27898, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-25T07:29:21Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 355, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2024-01-10T17:29:28Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2024-01-10T17:29:28Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 10211799, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)

nessi-bot · 2024-01-10T17:29:29Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2024-01-10T17:29:38Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2024.01/pr_197/10211799

Expected to fail as the eb file must be set to install before the easystack file check.

date	job status	comment
Jan 10 05:29:37 PM UTC 2024	submitted	job id `10211799` awaits release by job manager
Jan 10 05:31:34 PM UTC 2024	released	job awaits launch by Slurm scheduler
Jan 10 05:36:42 PM UTC 2024	running	job `10211799` is running
Jan 10 05:51:58 PM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-10211799.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1704908967.tar.gz` size: 31 MiB (33339031 bytes) entries: 3462 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `file/5.43-GCCcore-11.3.0.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `file/5.43-GCCcore-11.3.0` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

The file must be installed before the easystack_file check

TopRichard · 2024-01-10T17:49:37Z

bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell

nessi-bot · 2024-01-10T17:49:40Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2024-01-10T17:49:40Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2024-01-10T17:49:40Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 10211805, for details & status see {2023.06}[gompi/2022a] HISAT2 V2.2.1 #197 (comment)

nessi-bot · 2024-01-10T17:49:50Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2024.01/pr_197/10211805

date	job status	comment
Jan 10 05:49:48 PM UTC 2024	submitted	job id `10211805` awaits release by job manager
Jan 10 05:51:55 PM UTC 2024	released	job awaits launch by Slurm scheduler
Jan 10 05:57:04 PM UTC 2024	running	job `10211805` is running
Jan 10 07:40:34 PM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10211805.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1704910463.tar.gz` size: 195 MiB (205240519 bytes) entries: 4016 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `file/5.43-GCCcore-11.3.0.lua` `HISAT2/2.2.1-gompi-2022a.lua` `ncbi-vdb/3.0.2-gompi-2022a.lua` `Perl/5.34.1-GCCcore-11.3.0-minimal.lua` `SRA-Toolkit/3.0.3-gompi-2022a.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `file/5.43-GCCcore-11.3.0` `HISAT2/2.2.1-gompi-2022a` `ncbi-vdb/3.0.2-gompi-2022a` `Perl/5.34.1-GCCcore-11.3.0-minimal` `SRA-Toolkit/3.0.3-gompi-2022a` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Jan 11 09:47:31 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1704910463.tar.gz` to S3 bucket succeeded
Jan 11 09:54:56 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1704910463.tar.gz` downloaded to Stratum-0
Jan 11 09:57:05 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/staging/pull/687 to approve ingest
Jan 11 10:03:07 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1704910463.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/687
Jan 11 10:07:24 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1704910463.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

TopRichard · 2024-01-10T19:58:33Z

Now that it has built successfully for Saga, we will revert back the additional changes.

Revert Changes

trz42 · 2024-01-10T21:07:19Z

Builds on Saga (#197 (comment) and #197 (comment)) failed because a tarball that is stored on an FTP server cannot be downloaded on compute nodes. It seems the Squid proxy on Saga is preventing the download from FTP servers.

As a quick workaround we amend EASYBUILD_SOURCEPATH in configure_easybuild and deposit the tarball in the added directory.

This didn't work, because the directory where we deposited the tarball likely wasn't visible inside the container.

TopRichard · 2024-01-11T09:23:57Z

Summary for the issue and the workaround applied within this PR:
On Saga the Proxy server on the compute nodes didn't allow downloads using FTP and so the download of the source file for file-5.43-GCCcore-11.3.0.eb failed. The workaround was to download the file-5.43-GCCcore-11.3.0.eb, modify it so that the download protocol for the source file is HTTP instead of FTP, and then set the file within the main repository.
After the successful built on Saga, all changes were reverted back, and the ingestion procedure will be followed as usual.

TopRichard · 2024-01-11T09:46:07Z

Checklist for building:

Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
- Didn't succeed for aarch64/generic.
- Listed this PR in https://gitlab.sigma2.no/nessi/pilot/-/issues/7
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)
A workaround was applied for the builds on Saga.

TopRichard · 2024-01-11T10:25:48Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-amd-zen2
x86_64-generic

Checklist for deployment/ingestion

at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
[] encountered issues in the ingestion, likely related to troubles interacting with GitHub via PyGithub …
all tests in the CI for the ingested tarballs have succeeded (rerun failed tests ~ 10 mins after last ingest)
the PR has a license info for the ingested software
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; 
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/HISAT2/2.2.1-gompi-2022a* \
      aarch64/generic/{software,modules/all}/HISAT2/2.2.1-gompi-2022a*

log (note, output includes -bare modules)

ls: cannot access 'aarch64/generic/software/HISAT2/2.2.1-gompi-2022a*': No such file or directory
ls: cannot access 'aarch64/generic/modules/all/HISAT2/2.2.1-gompi-2022a*': No such file or directory
-rw-rw-r-- 1 cvmfs cvmfs 1377 Jan 10 11:13  x86_64/amd/zen2/modules/all/HISAT2/2.2.1-gompi-2022a.lua
-rw-rw-r-- 1 cvmfs cvmfs 1376 Jan 10 11:10  x86_64/generic/modules/all/HISAT2/2.2.1-gompi-2022a.lua
-rw-rw-r-- 1 cvmfs cvmfs 1384 Jan 10 19:12  x86_64/intel/broadwell/modules/all/HISAT2/2.2.1-gompi-2022a.lua
-rw-rw-r-- 1 cvmfs cvmfs 1389 Jan 10 13:22  x86_64/intel/skylake_avx512/modules/all/HISAT2/2.2.1-gompi-2022a.lua

x86_64/amd/zen2/software/HISAT2/2.2.1-gompi-2022a:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jan 10 11:13 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Jan 10 11:14 easybuild
dr-xr-xr-x 5 cvmfs cvmfs 4096 Jul 24  2020 example
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jul 24  2020 scripts

x86_64/generic/software/HISAT2/2.2.1-gompi-2022a:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jan 10 11:10 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Jan 10 11:10 easybuild
dr-xr-xr-x 5 cvmfs cvmfs 4096 Jul 24  2020 example
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jul 24  2020 scripts

x86_64/intel/broadwell/software/HISAT2/2.2.1-gompi-2022a:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jan 10 19:12 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Jan 10 19:12 easybuild
dr-xr-xr-x 5 cvmfs cvmfs 4096 Jul 24  2020 example
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jul 24  2020 scripts

x86_64/intel/skylake_avx512/software/HISAT2/2.2.1-gompi-2022a:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jan 10 13:22 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Jan 10 13:22 easybuild
dr-xr-xr-x 5 cvmfs cvmfs 4096 Jul 24  2020 example
dr-xr-xr-x 2 cvmfs cvmfs 4096 Jul 24  2020 scripts

justadejavu

👍🏻

{2023.06}[gompi/2022a] HISAT2 V2.2.1

972d04f

TopRichard added the NESSI/2023.06 label Oct 9, 2023

sync local branch with target

e25c971

TopRichard added the missing_aarch64 label Oct 12, 2023

Sync local branch with target

1c537ef

NorESSI deleted a comment from nessi-bot bot Jan 10, 2024

Update EESSI-pilot-install-software.sh

424d60d

The file must be installed before the easystack_file check

TopRichard added 3 commits January 10, 2024 21:05

Delete file-5.43-GCCcore-11.3.0.eb

aba11b2

Revert Changes

Update EESSI-pilot-install-software.sh

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Revert Changes

Update EESSI-pilot-install-software.sh

a34a595

Revert Changes

Update EESSI-pilot-install-software.sh

ef1ae88

TopRichard added bot:deploy and removed rebuild labels Jan 11, 2024

TopRichard added the ingested label Jan 11, 2024

TopRichard requested a review from justadejavu January 11, 2024 10:37

justadejavu approved these changes Jan 11, 2024

View reviewed changes

TopRichard merged commit 1af9309 into NorESSI:nessi.no-2023.06 Jan 11, 2024
61 checks passed

TopRichard deleted the nessi.no-2023.06-HISAT2/2.2.1-gompi/2022a branch January 11, 2024 10:39

{2023.06}[gompi/2022a] HISAT2 V2.2.1 #197

{2023.06}[gompi/2022a] HISAT2 V2.2.1 #197

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