{2023.06}[foss/2022a] add bio packages - set 3 #185

trz42 · 2023-10-07T19:09:42Z

Will install the following packages (incl dependencies) + some dependencies from original #183 (those built on all architectures ... we include them here so they will be available.

Packages + dependencies:

Pysam/0.20.0-GCC-11.3.0 (Pysam-0.20.0-GCC-11.3.0.eb)
TransDecoder/5.5.0-GCC-11.3.0 (TransDecoder-5.5.0-GCC-11.3.0.eb)
- CD-HIT/4.8.1-GCC-11.3.0 (CD-HIT-4.8.1-GCC-11.3.0.eb)
VCFtools/0.1.16-GCC-11.3.0 (VCFtools-0.1.16-GCC-11.3.0.eb)
~~VSEARCH/2.22.1-GCC-11.3.0 (VSEARCH-2.22.1-GCC-11.3.0.eb)~~ removed because it failed to build on all architectures $\longrightarrow$ build in separate PR

Dependencies from #183:

CMake/3.24.3-GCCcore-11.3.0 (CMake-3.24.3-GCCcore-11.3.0.eb)
elfutils/0.187-GCCcore-11.3.0 (elfutils-0.187-GCCcore-11.3.0.eb)
Ninja/1.10.2-GCCcore-11.3.0 (Ninja-1.10.2-GCCcore-11.3.0.eb)
XML-LibXML/2.0207-GCCcore-11.3.0 (XML-LibXML-2.0207-GCCcore-11.3.0.eb)
Z3/4.10.2-GCCcore-11.3.0 (Z3-4.10.2-GCCcore-11.3.0.eb)

nessi-bot · 2023-10-07T19:09:45Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T19:09:45Z

Instance AWS-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T19:09:45Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T19:09:45Z

Instance Fram-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2022.11-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

trz42 · 2023-10-07T19:10:05Z

bot: build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10
bot: build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11
bot: build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T19:10:07Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14073, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14074, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:10:07Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- submitted job 5424646, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:10:07Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:10:08Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7780, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7781, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7782, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)

nessi-bot · 2023-10-07T19:10:12Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_185/14073

date	job status	comment
Oct 07 07:09:47 PM UTC 2023	submitted	job id `14073` awaits release by job manager
Oct 07 07:10:43 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:15:50 PM UTC 2023	finished	🤷 UNKNOWN (click triangle for details) Job results file `_bot_job14073.result` does not exist in job directory or reading it failed. No artefacts were found/reported.

nessi-bot · 2023-10-07T19:10:14Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_185/5424646

date	job status	comment
Oct 07 19:10:13 UTC 2023	submitted	job id `5424646` awaits release by job manager
Oct 07 19:13:47 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 19:18:49 UTC 2023	running	job `5424646` is running
Oct 07 19:23:51 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-5424646.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696706618.tar.gz` size: 27 MiB (28705150 bytes) entries: 449 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `CD-HIT/4.8.1-GCC-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T19:10:15Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7780

date	job status	comment
Oct 07 07:10:14 PM UTC 2023	submitted	job id `7780` awaits release by job manager
Oct 07 07:11:48 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:13:57 PM UTC 2023	running	job `7780` is running
Oct 07 07:30:50 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7780.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696706993.tar.gz` size: 27 MiB (28595269 bytes) entries: 449 modules under 2023.06/software/linux/x86_64/generic/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `CD-HIT/4.8.1-GCC-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T19:10:16Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_185/14074

date	job status	comment
Oct 07 07:09:51 PM UTC 2023	submitted	job id `14074` awaits release by job manager
Oct 07 07:10:41 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:15:45 PM UTC 2023	running	job `14074` is running
Oct 07 07:25:53 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14074.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696706582.tar.gz` size: 26 MiB (28277132 bytes) entries: 449 modules under 2023.06/software/linux/aarch64/generic/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `CD-HIT/4.8.1-GCC-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T19:10:26Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7781

date	job status	comment
Oct 07 07:10:25 PM UTC 2023	submitted	job id `7781` awaits release by job manager
Oct 07 07:11:46 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:13:55 PM UTC 2023	running	job `7781` is running
Oct 07 07:30:48 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7781.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696706891.tar.gz` size: 27 MiB (28656095 bytes) entries: 449 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `CD-HIT/4.8.1-GCC-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T19:10:32Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7782

date	job status	comment
Oct 07 07:10:31 PM UTC 2023	submitted	job id `7782` awaits release by job manager
Oct 07 07:11:44 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:13:54 PM UTC 2023	running	job `7782` is running
Oct 07 07:30:46 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7782.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696706915.tar.gz` size: 27 MiB (28662175 bytes) entries: 449 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `CD-HIT/4.8.1-GCC-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

trz42 · 2023-10-07T19:13:53Z

Seems zen2 nodes on eX3 are down.

bot: build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T19:13:55Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:13:55Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:13:55Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:13:55Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7784, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)

nessi-bot · 2023-10-07T19:14:02Z

New job on instance AWS-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7784

date	job status	comment
Oct 07 07:14:01 PM UTC 2023	submitted	job id `7784` awaits release by job manager
Oct 07 07:16:00 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:20:17 PM UTC 2023	running	job `7784` is running
Oct 07 07:37:14 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7784.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696707334.tar.gz` size: 27 MiB (28676914 bytes) entries: 449 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `CD-HIT/4.8.1-GCC-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

trz42 · 2023-10-07T19:45:38Z

Try again after removing VSEARCH.

bot: build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10
bot: build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11
bot: build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T19:45:40Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14082, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:45:40Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- submitted job 5424651, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:45:40Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:45:40Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7789, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7790, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7791, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7792, for details & status see {2023.06}[foss/2022a] add bio packages - set 3 #185 (comment)

nessi-bot · 2023-10-07T19:45:46Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_185/14082

date	job status	comment
Oct 07 07:45:20 PM UTC 2023	submitted	job id `14082` awaits release by job manager
Oct 07 07:46:01 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:51:05 PM UTC 2023	running	job `14082` is running
Oct 07 08:26:19 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-14082.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696710017.tar.gz` size: 64 MiB (68125420 bytes) entries: 4143 modules under 2023.06/software/linux/aarch64/generic/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `CD-HIT/4.8.1-GCC-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 08:52:35 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1696710017.tar.gz` to S3 bucket succeeded
Oct 07 08:54:33 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1696710017.tar.gz` downloaded to Stratum-0
Oct 07 08:54:55 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/587 to approve ingest
Oct 07 09:22:14 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1696710017.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/587
Oct 07 09:23:12 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1696710017.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

nessi-bot · 2023-10-07T19:45:47Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_185/5424651

date	job status	comment
Oct 07 19:45:46 UTC 2023	submitted	job id `5424651` awaits release by job manager
Oct 07 19:49:01 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 19:54:04 UTC 2023	running	job `5424651` is running
Oct 07 20:24:15 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5424651.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696710087.tar.gz` size: 68 MiB (71909464 bytes) entries: 4143 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `CD-HIT/4.8.1-GCC-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 20:50:26 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696710087.tar.gz` to S3 bucket succeeded
Oct 07 08:54:42 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696710087.tar.gz` downloaded to Stratum-0
Oct 07 08:55:10 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/590 to approve ingest
Oct 07 09:22:23 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696710087.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/590
Oct 07 09:25:26 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696710087.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

nessi-bot · 2023-10-07T19:45:47Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7789

date	job status	comment
Oct 07 07:45:46 PM UTC 2023	submitted	job id `7789` awaits release by job manager
Oct 07 07:47:42 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:52:04 PM UTC 2023	running	job `7789` is running
Oct 07 08:27:44 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7789.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696710343.tar.gz` size: 67 MiB (71218826 bytes) entries: 4143 modules under 2023.06/software/linux/x86_64/generic/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `CD-HIT/4.8.1-GCC-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 08:50:57 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1696710343.tar.gz` to S3 bucket succeeded
Oct 07 08:54:39 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1696710343.tar.gz` downloaded to Stratum-0
Oct 07 08:55:04 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/589 to approve ingest
Oct 07 09:22:20 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1696710343.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/589
Oct 07 09:24:39 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1696710343.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

nessi-bot · 2023-10-07T19:45:54Z

New job on instance AWS-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7790

date	job status	comment
Oct 07 07:45:53 PM UTC 2023	submitted	job id `7790` awaits release by job manager
Oct 07 07:47:40 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:52:02 PM UTC 2023	running	job `7790` is running
Oct 07 08:27:43 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7790.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696710353.tar.gz` size: 68 MiB (71896527 bytes) entries: 4143 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `CD-HIT/4.8.1-GCC-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 08:50:46 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1696710353.tar.gz` to S3 bucket succeeded
Oct 07 08:54:36 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696710353.tar.gz` downloaded to Stratum-0
Oct 07 08:54:59 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/588 to approve ingest
Oct 07 09:22:17 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696710353.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/588
Oct 07 09:23:53 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696710353.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

nessi-bot · 2023-10-07T19:46:07Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7791

date	job status	comment
Oct 07 07:46:06 PM UTC 2023	submitted	job id `7791` awaits release by job manager
Oct 07 07:47:37 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:49:53 PM UTC 2023	running	job `7791` is running
Oct 07 08:21:18 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7791.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696710036.tar.gz` size: 68 MiB (71775888 bytes) entries: 4143 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `CD-HIT/4.8.1-GCC-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 08:50:21 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696710036.tar.gz` to S3 bucket succeeded
Oct 07 08:54:45 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696710036.tar.gz` downloaded to Stratum-0
Oct 07 08:55:15 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/591 to approve ingest
Oct 07 09:22:26 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696710036.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/591
Oct 07 09:26:09 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696710036.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/cascadelake/`

nessi-bot · 2023-10-07T19:46:14Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_185/7792

date	job status	comment
Oct 07 07:46:13 PM UTC 2023	submitted	job id `7792` awaits release by job manager
Oct 07 07:47:35 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:49:51 PM UTC 2023	running	job `7792` is running
Oct 07 08:19:12 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7792.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696709913.tar.gz` size: 68 MiB (71766607 bytes) entries: 4143 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `CD-HIT/4.8.1-GCC-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `Pysam/0.20.0-GCC-11.3.0.lua` `TransDecoder/5.5.0-GCC-11.3.0.lua` `VCFtools/0.1.16-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `CD-HIT/4.8.1-GCC-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `Pysam/0.20.0-GCC-11.3.0` `TransDecoder/5.5.0-GCC-11.3.0` `VCFtools/0.1.16-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 08:50:33 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696709913.tar.gz` to S3 bucket succeeded
Oct 07 08:54:48 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696709913.tar.gz` downloaded to Stratum-0
Oct 07 08:55:19 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/592 to approve ingest
Oct 07 09:22:29 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696709913.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/592
Oct 07 09:26:51 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696709913.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

trz42 · 2023-10-07T20:49:16Z

Checklist for building:

Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

trz42 · 2023-10-07T20:52:57Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-intel-cascadelake
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
all tests in the CI have succeeded (rerun failed tests ~ 10 mins after last ingest)
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; \
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/CMake/3.24.3*11.3.0* \
      aarch64/generic/{software,modules/all}/CMake/3.24.3*11.3.0* \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/{elfutils,Ninja,Pysam,TransDecoder,VCFtools,XML-LibXML,Z3}/*11.3.0* \
      aarch64/generic/{software,modules/all}/{elfutils,Ninja,Pysam,TransDecoder,VCFtools,XML-LibXML,Z3}/*11.3.0*

log

-rw-r--r-- 1 cvmfs cvmfs 1386 Oct  7 19:59 aarch64/generic/modules/all/CMake/3.24.3-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1393 Oct  7 20:00 aarch64/generic/modules/all/elfutils/0.187-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs  848 Oct  7 20:01 aarch64/generic/modules/all/Ninja/1.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1328 Oct  7 19:54 aarch64/generic/modules/all/Pysam/0.20.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1555 Oct  7 19:54 aarch64/generic/modules/all/TransDecoder/5.5.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1444 Oct  7 19:55 aarch64/generic/modules/all/VCFtools/0.1.16-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1773 Oct  7 19:55 aarch64/generic/modules/all/XML-LibXML/2.0207-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1102 Oct  7 20:19 aarch64/generic/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1386 Oct  7 20:10 x86_64/amd/zen2/modules/all/CMake/3.24.3-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1393 Oct  7 20:12 x86_64/amd/zen2/modules/all/elfutils/0.187-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs  848 Oct  7 20:12 x86_64/amd/zen2/modules/all/Ninja/1.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1328 Oct  7 20:03 x86_64/amd/zen2/modules/all/Pysam/0.20.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1555 Oct  7 20:04 x86_64/amd/zen2/modules/all/TransDecoder/5.5.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1444 Oct  7 20:04 x86_64/amd/zen2/modules/all/VCFtools/0.1.16-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1773 Oct  7 20:05 x86_64/amd/zen2/modules/all/XML-LibXML/2.0207-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1102 Oct  7 20:25 x86_64/amd/zen2/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1385 Oct  7 20:10 x86_64/generic/modules/all/CMake/3.24.3-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1392 Oct  7 20:12 x86_64/generic/modules/all/elfutils/0.187-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs  847 Oct  7 20:12 x86_64/generic/modules/all/Ninja/1.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1327 Oct  7 20:04 x86_64/generic/modules/all/Pysam/0.20.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1554 Oct  7 20:05 x86_64/generic/modules/all/TransDecoder/5.5.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1443 Oct  7 20:05 x86_64/generic/modules/all/VCFtools/0.1.16-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1772 Oct  7 20:06 x86_64/generic/modules/all/XML-LibXML/2.0207-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1101 Oct  7 20:24 x86_64/generic/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1393 Oct  7 20:03 x86_64/intel/broadwell/modules/all/CMake/3.24.3-GCCcore-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1400 Oct  7 20:05 x86_64/intel/broadwell/modules/all/elfutils/0.187-GCCcore-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs  855 Oct  7 20:06 x86_64/intel/broadwell/modules/all/Ninja/1.10.2-GCCcore-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1335 Oct  7 19:55 x86_64/intel/broadwell/modules/all/Pysam/0.20.0-GCC-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1562 Oct  7 19:56 x86_64/intel/broadwell/modules/all/TransDecoder/5.5.0-GCC-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1451 Oct  7 19:56 x86_64/intel/broadwell/modules/all/VCFtools/0.1.16-GCC-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1780 Oct  7 19:57 x86_64/intel/broadwell/modules/all/XML-LibXML/2.0207-GCCcore-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1109 Oct  7 20:20 x86_64/intel/broadwell/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1395 Oct  7 20:08 x86_64/intel/cascadelake/modules/all/CMake/3.24.3-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1402 Oct  7 20:08 x86_64/intel/cascadelake/modules/all/elfutils/0.187-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs  857 Oct  7 20:09 x86_64/intel/cascadelake/modules/all/Ninja/1.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1337 Oct  7 20:01 x86_64/intel/cascadelake/modules/all/Pysam/0.20.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1564 Oct  7 20:02 x86_64/intel/cascadelake/modules/all/TransDecoder/5.5.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1453 Oct  7 20:02 x86_64/intel/cascadelake/modules/all/VCFtools/0.1.16-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1782 Oct  7 20:03 x86_64/intel/cascadelake/modules/all/XML-LibXML/2.0207-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1111 Oct  7 20:19 x86_64/intel/cascadelake/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1398 Oct  7 20:06 x86_64/intel/skylake_avx512/modules/all/CMake/3.24.3-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1405 Oct  7 20:07 x86_64/intel/skylake_avx512/modules/all/elfutils/0.187-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs  860 Oct  7 20:07 x86_64/intel/skylake_avx512/modules/all/Ninja/1.10.2-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1340 Oct  7 20:01 x86_64/intel/skylake_avx512/modules/all/Pysam/0.20.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1567 Oct  7 20:01 x86_64/intel/skylake_avx512/modules/all/TransDecoder/5.5.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1456 Oct  7 20:02 x86_64/intel/skylake_avx512/modules/all/VCFtools/0.1.16-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1785 Oct  7 20:03 x86_64/intel/skylake_avx512/modules/all/XML-LibXML/2.0207-GCCcore-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1114 Oct  7 20:17 x86_64/intel/skylake_avx512/modules/all/Z3/4.10.2-GCCcore-11.3.0.lua

aarch64/generic/software/CMake/3.24.3-GCCcore-11.3.0:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 19:59 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:59 doc
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:59 easybuild
dr-xr-xr-x 7 cvmfs cvmfs 4096 Oct  7 19:59 share

aarch64/generic/software/elfutils/0.187-GCCcore-11.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:00 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:00 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:00 include
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:00 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:00 lib64 -> lib
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:00 share

aarch64/generic/software/Ninja/1.10.2-GCCcore-11.3.0:
total 9
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:01 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:01 easybuild

aarch64/generic/software/Pysam/0.20.0-GCC-11.3.0:
total 10
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:54 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:46 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 19:53 lib64 -> lib

aarch64/generic/software/TransDecoder/5.5.0-GCC-11.3.0:
total 68
-r--r--r-- 1 cvmfs cvmfs  4858 Oct 22  2018 Changelog.txt
dr-xr-xr-x 3 cvmfs cvmfs  4096 Oct  7 19:54 easybuild
-r--r--r-- 1 cvmfs cvmfs  1492 Oct 22  2018 LICENSE.txt
-r--r--r-- 1 cvmfs cvmfs   218 Oct 22  2018 Makefile
-r--r--r-- 1 cvmfs cvmfs   120 Oct 22  2018 notes
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 PerlLib
-r--r--r-- 1 cvmfs cvmfs   130 Oct 22  2018 README.md
dr-xr-xr-x 7 cvmfs cvmfs  4096 Oct 22  2018 sample_data
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 __testing
-r-xr-xr-x 1 cvmfs cvmfs 12461 Oct 22  2018 TransDecoder.LongOrfs
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.lrgTests
-r-xr-xr-x 1 cvmfs cvmfs 16344 Oct 22  2018 TransDecoder.Predict
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.wiki
dr-xr-xr-x 6 cvmfs cvmfs  4096 Oct 22  2018 util

aarch64/generic/software/VCFtools/0.1.16-GCC-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 19:55 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:55 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:55 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 19:55 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:55 share

aarch64/generic/software/XML-LibXML/2.0207-GCCcore-11.3.0:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:55 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:55 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 19:55 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:55 man

aarch64/generic/software/Z3/4.10.2-GCCcore-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:19 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:19 easybuild
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:19 include
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:19 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:19 lib64 -> lib

x86_64/amd/zen2/software/CMake/3.24.3-GCCcore-11.3.0:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:10 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:10 doc
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:10 easybuild
dr-xr-xr-x 7 cvmfs cvmfs 4096 Oct  7 20:10 share

x86_64/amd/zen2/software/elfutils/0.187-GCCcore-11.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:12 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:12 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:12 include
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:12 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:12 lib64 -> lib
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:12 share

x86_64/amd/zen2/software/Ninja/1.10.2-GCCcore-11.3.0:
total 9
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:12 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:12 easybuild

x86_64/amd/zen2/software/Pysam/0.20.0-GCC-11.3.0:
total 10
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:03 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:57 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:03 lib64 -> lib

x86_64/amd/zen2/software/TransDecoder/5.5.0-GCC-11.3.0:
total 68
-r--r--r-- 1 cvmfs cvmfs  4858 Oct 22  2018 Changelog.txt
dr-xr-xr-x 3 cvmfs cvmfs  4096 Oct  7 20:04 easybuild
-r--r--r-- 1 cvmfs cvmfs  1492 Oct 22  2018 LICENSE.txt
-r--r--r-- 1 cvmfs cvmfs   218 Oct 22  2018 Makefile
-r--r--r-- 1 cvmfs cvmfs   120 Oct 22  2018 notes
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 PerlLib
-r--r--r-- 1 cvmfs cvmfs   130 Oct 22  2018 README.md
dr-xr-xr-x 7 cvmfs cvmfs  4096 Oct 22  2018 sample_data
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 __testing
-r-xr-xr-x 1 cvmfs cvmfs 12461 Oct 22  2018 TransDecoder.LongOrfs
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.lrgTests
-r-xr-xr-x 1 cvmfs cvmfs 16344 Oct 22  2018 TransDecoder.Predict
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.wiki
dr-xr-xr-x 6 cvmfs cvmfs  4096 Oct 22  2018 util

x86_64/amd/zen2/software/VCFtools/0.1.16-GCC-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:04 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:04 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:04 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:04 share

x86_64/amd/zen2/software/XML-LibXML/2.0207-GCCcore-11.3.0:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:05 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 man

x86_64/amd/zen2/software/Z3/4.10.2-GCCcore-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:25 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:25 easybuild
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:25 include
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:25 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:25 lib64 -> lib

x86_64/generic/software/CMake/3.24.3-GCCcore-11.3.0:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:10 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:10 doc
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:10 easybuild
dr-xr-xr-x 7 cvmfs cvmfs 4096 Oct  7 20:10 share

x86_64/generic/software/elfutils/0.187-GCCcore-11.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:11 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:12 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:11 include
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:11 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:11 lib64 -> lib
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:11 share

x86_64/generic/software/Ninja/1.10.2-GCCcore-11.3.0:
total 9
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:12 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:12 easybuild

x86_64/generic/software/Pysam/0.20.0-GCC-11.3.0:
total 10
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:04 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:57 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:04 lib64 -> lib

x86_64/generic/software/TransDecoder/5.5.0-GCC-11.3.0:
total 68
-r--r--r-- 1 cvmfs cvmfs  4858 Oct 22  2018 Changelog.txt
dr-xr-xr-x 3 cvmfs cvmfs  4096 Oct  7 20:05 easybuild
-r--r--r-- 1 cvmfs cvmfs  1492 Oct 22  2018 LICENSE.txt
-r--r--r-- 1 cvmfs cvmfs   218 Oct 22  2018 Makefile
-r--r--r-- 1 cvmfs cvmfs   120 Oct 22  2018 notes
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 PerlLib
-r--r--r-- 1 cvmfs cvmfs   130 Oct 22  2018 README.md
dr-xr-xr-x 7 cvmfs cvmfs  4096 Oct 22  2018 sample_data
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 __testing
-r-xr-xr-x 1 cvmfs cvmfs 12461 Oct 22  2018 TransDecoder.LongOrfs
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.lrgTests
-r-xr-xr-x 1 cvmfs cvmfs 16344 Oct 22  2018 TransDecoder.Predict
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.wiki
dr-xr-xr-x 6 cvmfs cvmfs  4096 Oct 22  2018 util

x86_64/generic/software/VCFtools/0.1.16-GCC-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:05 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:05 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 share

x86_64/generic/software/XML-LibXML/2.0207-GCCcore-11.3.0:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:06 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:06 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:06 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:06 man

x86_64/generic/software/Z3/4.10.2-GCCcore-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:24 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:24 easybuild
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:24 include
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:24 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:24 lib64 -> lib

x86_64/intel/broadwell/software/CMake/3.24.3-GCCcore-11.3.0:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:03 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 doc
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:03 easybuild
dr-xr-xr-x 7 cvmfs cvmfs 4096 Oct  7 20:03 share

x86_64/intel/broadwell/software/elfutils/0.187-GCCcore-11.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:05 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 include
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:05 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:05 lib64 -> lib
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:05 share

x86_64/intel/broadwell/software/Ninja/1.10.2-GCCcore-11.3.0:
total 9
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:06 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:06 easybuild

x86_64/intel/broadwell/software/Pysam/0.20.0-GCC-11.3.0:
total 10
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:55 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:49 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 19:55 lib64 -> lib

x86_64/intel/broadwell/software/TransDecoder/5.5.0-GCC-11.3.0:
total 68
-r--r--r-- 1 cvmfs cvmfs  4858 Oct 22  2018 Changelog.txt
dr-xr-xr-x 3 cvmfs cvmfs  4096 Oct  7 19:56 easybuild
-r--r--r-- 1 cvmfs cvmfs  1492 Oct 22  2018 LICENSE.txt
-r--r--r-- 1 cvmfs cvmfs   218 Oct 22  2018 Makefile
-r--r--r-- 1 cvmfs cvmfs   120 Oct 22  2018 notes
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 PerlLib
-r--r--r-- 1 cvmfs cvmfs   130 Oct 22  2018 README.md
dr-xr-xr-x 7 cvmfs cvmfs  4096 Oct 22  2018 sample_data
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 __testing
-r-xr-xr-x 1 cvmfs cvmfs 12461 Oct 22  2018 TransDecoder.LongOrfs
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.lrgTests
-r-xr-xr-x 1 cvmfs cvmfs 16344 Oct 22  2018 TransDecoder.Predict
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.wiki
dr-xr-xr-x 6 cvmfs cvmfs  4096 Oct 22  2018 util

x86_64/intel/broadwell/software/VCFtools/0.1.16-GCC-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 19:56 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:56 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:56 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 19:56 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:56 share

x86_64/intel/broadwell/software/XML-LibXML/2.0207-GCCcore-11.3.0:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:57 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:56 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 19:57 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:56 man

x86_64/intel/broadwell/software/Z3/4.10.2-GCCcore-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:20 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:20 easybuild
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:20 include
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:20 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:20 lib64 -> lib

x86_64/intel/cascadelake/software/CMake/3.24.3-GCCcore-11.3.0:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:08 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:08 doc
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:08 easybuild
dr-xr-xr-x 7 cvmfs cvmfs 4096 Oct  7 20:08 share

x86_64/intel/cascadelake/software/elfutils/0.187-GCCcore-11.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:08 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:08 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:08 include
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:08 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:08 lib64 -> lib
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:08 share

x86_64/intel/cascadelake/software/Ninja/1.10.2-GCCcore-11.3.0:
total 9
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:09 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:09 easybuild

x86_64/intel/cascadelake/software/Pysam/0.20.0-GCC-11.3.0:
total 10
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:01 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:56 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:01 lib64 -> lib

x86_64/intel/cascadelake/software/TransDecoder/5.5.0-GCC-11.3.0:
total 68
-r--r--r-- 1 cvmfs cvmfs  4858 Oct 22  2018 Changelog.txt
dr-xr-xr-x 3 cvmfs cvmfs  4096 Oct  7 20:02 easybuild
-r--r--r-- 1 cvmfs cvmfs  1492 Oct 22  2018 LICENSE.txt
-r--r--r-- 1 cvmfs cvmfs   218 Oct 22  2018 Makefile
-r--r--r-- 1 cvmfs cvmfs   120 Oct 22  2018 notes
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 PerlLib
-r--r--r-- 1 cvmfs cvmfs   130 Oct 22  2018 README.md
dr-xr-xr-x 7 cvmfs cvmfs  4096 Oct 22  2018 sample_data
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 __testing
-r-xr-xr-x 1 cvmfs cvmfs 12461 Oct 22  2018 TransDecoder.LongOrfs
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.lrgTests
-r-xr-xr-x 1 cvmfs cvmfs 16344 Oct 22  2018 TransDecoder.Predict
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.wiki
dr-xr-xr-x 6 cvmfs cvmfs  4096 Oct 22  2018 util

x86_64/intel/cascadelake/software/VCFtools/0.1.16-GCC-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:02 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:03 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:02 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 share

x86_64/intel/cascadelake/software/XML-LibXML/2.0207-GCCcore-11.3.0:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:03 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:03 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:03 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:03 man

x86_64/intel/cascadelake/software/Z3/4.10.2-GCCcore-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:19 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:19 easybuild
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:19 include
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:19 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:19 lib64 -> lib

x86_64/intel/skylake_avx512/software/CMake/3.24.3-GCCcore-11.3.0:
total 18
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:06 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:06 doc
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:06 easybuild
dr-xr-xr-x 7 cvmfs cvmfs 4096 Oct  7 20:06 share

x86_64/intel/skylake_avx512/software/elfutils/0.187-GCCcore-11.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:07 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:07 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:07 include
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:07 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:07 lib64 -> lib
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:07 share

x86_64/intel/skylake_avx512/software/Ninja/1.10.2-GCCcore-11.3.0:
total 9
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:07 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:07 easybuild

x86_64/intel/skylake_avx512/software/Pysam/0.20.0-GCC-11.3.0:
total 10
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:01 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:54 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:01 lib64 -> lib

x86_64/intel/skylake_avx512/software/TransDecoder/5.5.0-GCC-11.3.0:
total 68
-r--r--r-- 1 cvmfs cvmfs  4858 Oct 22  2018 Changelog.txt
dr-xr-xr-x 3 cvmfs cvmfs  4096 Oct  7 20:01 easybuild
-r--r--r-- 1 cvmfs cvmfs  1492 Oct 22  2018 LICENSE.txt
-r--r--r-- 1 cvmfs cvmfs   218 Oct 22  2018 Makefile
-r--r--r-- 1 cvmfs cvmfs   120 Oct 22  2018 notes
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 PerlLib
-r--r--r-- 1 cvmfs cvmfs   130 Oct 22  2018 README.md
dr-xr-xr-x 7 cvmfs cvmfs  4096 Oct 22  2018 sample_data
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 __testing
-r-xr-xr-x 1 cvmfs cvmfs 12461 Oct 22  2018 TransDecoder.LongOrfs
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.lrgTests
-r-xr-xr-x 1 cvmfs cvmfs 16344 Oct 22  2018 TransDecoder.Predict
dr-xr-xr-x 2 cvmfs cvmfs  4096 Oct 22  2018 TransDecoder.wiki
dr-xr-xr-x 6 cvmfs cvmfs  4096 Oct 22  2018 util

x86_64/intel/skylake_avx512/software/VCFtools/0.1.16-GCC-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:02 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:02 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 share

x86_64/intel/skylake_avx512/software/XML-LibXML/2.0207-GCCcore-11.3.0:
total 14
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:03 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:03 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:02 man

x86_64/intel/skylake_avx512/software/Z3/4.10.2-GCCcore-11.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:17 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 20:17 easybuild
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 20:17 include
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 20:17 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Oct  7 20:17 lib64 -> lib

poksumdo

Good progress.

{2023.06}[foss/2022a] add bio paackages - set 3

f3482bd

trz42 added the NESSI/2023.06 label Oct 7, 2023

removed VSEARCH, failed to build for all architectures

335b63d

fix merge conflict after PR183

9be0890

trz42 added the bot:deploy label Oct 7, 2023

poksumdo approved these changes Oct 7, 2023

View reviewed changes

poksumdo merged commit feedc84 into NorESSI:nessi.no-2023.06 Oct 7, 2023
72 of 73 checks passed

trz42 added the ingested label Oct 7, 2023

{2023.06}[foss/2022a] add bio packages - set 3 #185

{2023.06}[foss/2022a] add bio packages - set 3 #185

Conversation

trz42 commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023

nessi-bot bot commented Oct 7, 2023

nessi-bot bot commented Oct 7, 2023

nessi-bot bot commented Oct 7, 2023

trz42 commented Oct 7, 2023

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

trz42 commented Oct 7, 2023

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

trz42 commented Oct 7, 2023

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited Loading

nessi-bot bot commented Oct 7, 2023 • edited by trz42 Loading

nessi-bot bot commented Oct 7, 2023 • edited by trz42 Loading

nessi-bot bot commented Oct 7, 2023 • edited by trz42 Loading

nessi-bot bot commented Oct 7, 2023 • edited by trz42 Loading

nessi-bot bot commented Oct 7, 2023 • edited by trz42 Loading

nessi-bot bot commented Oct 7, 2023 • edited by trz42 Loading

trz42 commented Oct 7, 2023

trz42 commented Oct 7, 2023 • edited Loading

poksumdo left a comment

Choose a reason for hiding this comment

trz42 commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited

Loading

nessi-bot bot commented Oct 7, 2023 •

edited by trz42

Loading

nessi-bot bot commented Oct 7, 2023 •

edited by trz42

Loading

nessi-bot bot commented Oct 7, 2023 •

edited by trz42

Loading

nessi-bot bot commented Oct 7, 2023 •

edited by trz42

Loading

nessi-bot bot commented Oct 7, 2023 •

edited by trz42

Loading

nessi-bot bot commented Oct 7, 2023 •

edited by trz42

Loading

trz42 commented Oct 7, 2023 •

edited

Loading