{2023.06}[foss/2022a] GROMACS V2023.1 #178

TopRichard · 2023-10-05T15:57:14Z

Trying to add GROMACS/2023.1-foss/2022a to NESSI stack.

All modules that will be installed:

* scikit-build/0.15.0-GCCcore-11.3.0 (scikit-build-0.15.0-GCCcore-11.3.0.eb)
* networkx/2.8.4-foss-2022a (networkx-2.8.4-foss-2022a.eb)
* GROMACS/2023.1-foss-2022a (GROMACS-2023.1-foss-2022a.eb)

nessi-bot · 2023-10-05T15:57:18Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-05T15:57:18Z

Instance Fram-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2022.11-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-05T15:57:18Z

Instance AWS-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-05T15:57:18Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

TopRichard · 2023-10-05T15:58:42Z

bot: build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell

nessi-bot · 2023-10-05T15:58:44Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2023-10-05T15:58:44Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2023-10-05T15:58:44Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- submitted job 5423371, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)

nessi-bot · 2023-10-05T15:58:44Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted

nessi-bot · 2023-10-05T15:58:50Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_178/5423371

date	job status	comment
Oct 05 15:58:48 UTC 2023	submitted	job id `5423371` awaits release by job manager
Oct 05 16:00:27 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 05 16:05:31 UTC 2023	running	job `5423371` is running
Oct 05 18:21:11 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5423371.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696529735.tar.gz` size: 201 MiB (211345337 bytes) entries: 18376 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `CMake/3.24.3-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `GROMACS/2023.1-foss-2022a.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `CMake/3.24.3-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `GROMACS/2023.1-foss-2022a` `hypothesis/6.46.7-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `pybind11/2.9.2-GCCcore-11.3.0` `scikit-build/0.15.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

TopRichard · 2023-10-05T18:42:46Z

bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake
bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

nessi-bot · 2023-10-05T18:42:48Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-05T18:42:49Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 13897, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 13898, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)

nessi-bot · 2023-10-05T18:42:49Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 7732, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- submitted job 7733, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 7734, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-05T18:42:49Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-05T18:42:55Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_178/13897

date	job status	comment
Oct 05 06:42:31 PM UTC 2023	submitted	job id `13897` awaits release by job manager
Oct 05 08:58:03 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 05 09:03:16 PM UTC 2023	running	job `13897` is running
Oct 06 04:50:21 PM UTC 2023	finished	🤷 UNKNOWN (click triangle for details) Job results file `_bot_job13897.result` does not exist in job directory or reading it failed. No artefacts were found/reported.

nessi-bot · 2023-10-05T18:42:56Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7732

date	job status	comment
Oct 05 06:42:55 PM UTC 2023	submitted	job id `7732` awaits release by job manager
Oct 05 06:43:06 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 05 06:47:23 PM UTC 2023	running	job `7732` is running
Oct 05 08:36:37 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7732.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696538076.tar.gz` size: 198 MiB (207968617 bytes) entries: 18376 modules under 2023.06/software/linux/x86_64/generic/modules/all `CMake/3.24.3-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `GROMACS/2023.1-foss-2022a.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` software under 2023.06/software/linux/x86_64/generic/software `CMake/3.24.3-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `GROMACS/2023.1-foss-2022a` `hypothesis/6.46.7-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `pybind11/2.9.2-GCCcore-11.3.0` `scikit-build/0.15.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-05T18:42:59Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_178/13898

date	job status	comment
Oct 05 06:42:35 PM UTC 2023	submitted	job id `13898` awaits release by job manager
Oct 05 08:57:58 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 05 09:03:11 PM UTC 2023	running	job `13898` is running
Oct 05 10:34:07 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13898.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696544979.tar.gz` size: 154 MiB (162386917 bytes) entries: 17590 modules under 2023.06/software/linux/aarch64/generic/modules/all `CMake/3.24.3-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` software under 2023.06/software/linux/aarch64/generic/software `CMake/3.24.3-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `hypothesis/6.46.7-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `pybind11/2.9.2-GCCcore-11.3.0` `scikit-build/0.15.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-05T18:43:03Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7733

date	job status	comment
Oct 05 06:43:02 PM UTC 2023	submitted	job id `7733` awaits release by job manager
Oct 05 06:45:14 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 05 06:55:46 PM UTC 2023	running	job `7733` is running
Oct 05 08:38:40 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7733.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696538244.tar.gz` size: 199 MiB (209660853 bytes) entries: 18376 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `CMake/3.24.3-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `GROMACS/2023.1-foss-2022a.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `CMake/3.24.3-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `GROMACS/2023.1-foss-2022a` `hypothesis/6.46.7-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `pybind11/2.9.2-GCCcore-11.3.0` `scikit-build/0.15.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-05T18:43:10Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7734

date	job status	comment
Oct 05 06:43:09 PM UTC 2023	submitted	job id `7734` awaits release by job manager
Oct 05 06:45:11 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 05 06:49:30 PM UTC 2023	running	job `7734` is running
Oct 05 08:20:16 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7734.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696537082.tar.gz` size: 160 MiB (168386534 bytes) entries: 17590 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `CMake/3.24.3-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `CMake/3.24.3-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `hypothesis/6.46.7-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `pybind11/2.9.2-GCCcore-11.3.0` `scikit-build/0.15.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

TopRichard · 2023-10-06T05:33:50Z

bot: build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake

nessi-bot · 2023-10-06T05:33:53Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- submitted job 7738, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)

nessi-bot · 2023-10-06T05:33:53Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T05:33:53Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T05:33:54Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T05:34:00Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb10 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7738

date	job status	comment
Oct 06 05:33:59 AM UTC 2023	submitted	job id `7738` awaits release by job manager
Oct 06 05:34:15 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 05:38:17 AM UTC 2023	running	job `7738` is running
Oct 06 07:33:37 AM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7738.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696577552.tar.gz` size: 199 MiB (209657372 bytes) entries: 18376 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `CMake/3.24.3-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `GROMACS/2023.1-foss-2022a.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `CMake/3.24.3-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `GROMACS/2023.1-foss-2022a` `hypothesis/6.46.7-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `pybind11/2.9.2-GCCcore-11.3.0` `scikit-build/0.15.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

TopRichard · 2023-10-06T08:00:40Z

bot: build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic

nessi-bot · 2023-10-06T08:00:43Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- submitted job 13929, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)

TopRichard · 2023-10-08T11:06:22Z

bot: build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2

nessi-bot · 2023-10-08T11:06:24Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T11:06:24Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- submitted job 7861, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)

nessi-bot · 2023-10-08T11:06:24Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T11:06:24Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:zen2 from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T11:06:31Z

New job on instance AWS-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb10 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7861

date	job status	comment
Oct 08 11:06:30 AM UTC 2023	submitted	job id `7861` awaits release by job manager
Oct 08 11:07:24 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 08 11:11:27 AM UTC 2023	running	job `7861` is running
Oct 08 12:45:26 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7861.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696769086.tar.gz` size: 43 MiB (46029403 bytes) entries: 2322 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `GROMACS/2023.1-foss-2022a.lua` `networkx/2.8.4-foss-2022a.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `GROMACS/2023.1-foss-2022a` `networkx/2.8.4-foss-2022a` `scikit-build/0.15.0-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 09 06:15:39 AM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1696769086.tar.gz` to S3 bucket succeeded
Oct 09 06:18:39 AM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696769086.tar.gz` downloaded to Stratum-0
Oct 09 06:20:29 AM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/644 to approve ingest
Oct 09 06:23:44 AM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696769086.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/644
Oct 09 06:29:21 AM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696769086.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

TopRichard · 2023-10-08T11:20:04Z

bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

nessi-bot · 2023-10-08T11:20:06Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 14098, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)

nessi-bot · 2023-10-08T11:20:06Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T11:20:07Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T11:20:07Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T11:20:10Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_178/14098

date	job status	comment
Oct 08 11:19:45 AM UTC 2023	submitted	job id `14098` awaits release by job manager
Oct 08 11:23:27 AM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 08 11:28:33 AM UTC 2023	running	job `14098` is running
Oct 08 11:38:39 AM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14098.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696764847.tar.gz` size: 3 MiB (3892491 bytes) entries: 1536 modules under 2023.06/software/linux/aarch64/generic/modules/all `networkx/2.8.4-foss-2022a.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `networkx/2.8.4-foss-2022a` `scikit-build/0.15.0-GCCcore-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

TopRichard · 2023-10-08T17:49:12Z

bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake
bot: build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake
bot: build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell
bot: build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic

nessi-bot · 2023-10-08T17:49:14Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- submitted job 14127, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)

nessi-bot · 2023-10-08T17:49:14Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- submitted job 5425430, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T17:49:14Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- no jobs were submitted
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T17:49:14Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/cascadelake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake
received bot command build inst:AWS repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake
received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb10 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 7876, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:AWS repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/cascadelake resulted in:
- submitted job 7877, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:AWS repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/skylake resulted in:
- submitted job 7878, for details & status see {2023.06}[foss/2022a] GROMACS V2023.1 #178 (comment)
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb10 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2023-10-08T17:49:21Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb10 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_178/14127

date	job status	comment
Oct 08 05:48:56 PM UTC 2023	submitted	job id `14127` awaits release by job manager
Oct 08 05:52:58 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 08 05:58:07 PM UTC 2023	running	job `14127` is running
Oct 08 08:25:50 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-14127.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696796510.tar.gz` size: 36 MiB (37808109 bytes) entries: 2322 modules under 2023.06/software/linux/aarch64/generic/modules/all `GROMACS/2023.1-foss-2022a.lua` `networkx/2.8.4-foss-2022a.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `GROMACS/2023.1-foss-2022a` `networkx/2.8.4-foss-2022a` `scikit-build/0.15.0-GCCcore-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 09 06:17:31 AM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1696796510.tar.gz` to S3 bucket succeeded
Oct 09 06:18:36 AM UTC 2023	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1696796510.tar.gz` downloaded to Stratum-0
Oct 09 06:20:24 AM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/643 to approve ingest
Oct 09 06:23:41 AM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1696796510.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/643
Oct 09 06:28:50 AM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1696796510.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

nessi-bot · 2023-10-08T17:49:21Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7876

date	job status	comment
Oct 08 05:49:20 PM UTC 2023	submitted	job id `7876` awaits release by job manager
Oct 08 05:51:24 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 08 05:55:34 PM UTC 2023	running	job `7876` is running
Oct 08 06:59:05 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7876.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696791382.tar.gz` size: 41 MiB (43652367 bytes) entries: 2322 modules under 2023.06/software/linux/x86_64/generic/modules/all `GROMACS/2023.1-foss-2022a.lua` `networkx/2.8.4-foss-2022a.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `GROMACS/2023.1-foss-2022a` `networkx/2.8.4-foss-2022a` `scikit-build/0.15.0-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 09 06:15:27 AM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1696791382.tar.gz` to S3 bucket succeeded
Oct 09 06:18:42 AM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1696791382.tar.gz` downloaded to Stratum-0
Oct 09 06:20:34 AM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/645 to approve ingest
Oct 09 06:23:47 AM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1696791382.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/645
Oct 09 06:29:52 AM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1696791382.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

nessi-bot · 2023-10-08T17:49:22Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_178/5425430

date	job status	comment
Oct 08 17:49:21 UTC 2023	submitted	job id `5425430` awaits release by job manager
Oct 08 17:51:53 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 08 17:56:56 UTC 2023	running	job `5425430` is running
Oct 08 19:02:33 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5425430.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696791431.tar.gz` size: 44 MiB (46175217 bytes) entries: 2322 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `GROMACS/2023.1-foss-2022a.lua` `networkx/2.8.4-foss-2022a.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `GROMACS/2023.1-foss-2022a` `networkx/2.8.4-foss-2022a` `scikit-build/0.15.0-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 09 06:15:34 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696791431.tar.gz` to S3 bucket succeeded
Oct 09 06:18:44 AM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696791431.tar.gz` downloaded to Stratum-0
Oct 09 06:20:39 AM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/646 to approve ingest
Oct 09 06:23:51 AM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696791431.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/646
Oct 09 06:30:31 AM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696791431.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

nessi-bot · 2023-10-08T17:49:28Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7877

date	job status	comment
Oct 08 05:49:27 PM UTC 2023	submitted	job id `7877` awaits release by job manager
Oct 08 05:51:21 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 08 05:55:31 PM UTC 2023	running	job `7877` is running
Oct 08 06:59:03 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7877.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696791413.tar.gz` size: 43 MiB (45210379 bytes) entries: 2322 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `GROMACS/2023.1-foss-2022a.lua` `networkx/2.8.4-foss-2022a.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `GROMACS/2023.1-foss-2022a` `networkx/2.8.4-foss-2022a` `scikit-build/0.15.0-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 09 06:15:17 AM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696791413.tar.gz` to S3 bucket succeeded
Oct 09 06:18:47 AM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696791413.tar.gz` downloaded to Stratum-0
Oct 09 06:20:44 AM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/647 to approve ingest
Oct 09 06:23:54 AM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696791413.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/647
Oct 09 06:31:00 AM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696791413.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/cascadelake/`

nessi-bot · 2023-10-08T17:49:35Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb10 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_178/7878

date	job status	comment
Oct 08 05:49:34 PM UTC 2023	submitted	job id `7878` awaits release by job manager
Oct 08 05:51:18 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 08 05:55:28 PM UTC 2023	running	job `7878` is running
Oct 08 07:05:25 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7878.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696791800.tar.gz` size: 43 MiB (45223895 bytes) entries: 2322 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `GROMACS/2023.1-foss-2022a.lua` `networkx/2.8.4-foss-2022a.lua` `scikit-build/0.15.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `GROMACS/2023.1-foss-2022a` `networkx/2.8.4-foss-2022a` `scikit-build/0.15.0-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 09 06:15:49 AM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696791800.tar.gz` to S3 bucket succeeded
Oct 09 06:18:50 AM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696791800.tar.gz` downloaded to Stratum-0
Oct 09 06:20:49 AM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/648 to approve ingest
Oct 09 06:23:57 AM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696791800.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/648
Oct 09 06:31:29 AM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696791800.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

TopRichard · 2023-10-09T06:16:23Z

Checklist for building GROMACS V2023.1 :

Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

TopRichard · 2023-10-09T06:40:30Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-intel-cascadelake
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
[] encountered issues in the ingestion, likely related to troubles interacting with GitHub via PyGithub …
all tests in the CI have succeeded (rerun failed tests ~ 10 mins after last ingest)
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; 
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/GROMACS/2023.1-foss-2022a* \
      aarch64/generic/{software,modules/all}/GROMACS/2023.1-foss-2022a*

-rw-r--r--. 1 cvmfs cvmfs 2335 Oct  8 20:20 aarch64/generic/modules/all/GROMACS/2023.1-foss-2022a.lua
-rw-r--r--. 1 cvmfs cvmfs 2335 Oct  8 12:43 x86_64/amd/zen2/modules/all/GROMACS/2023.1-foss-2022a.lua
-rw-r--r--. 1 cvmfs cvmfs 2334 Oct  8 18:54 x86_64/generic/modules/all/GROMACS/2023.1-foss-2022a.lua
-rw-rw-r--. 1 cvmfs cvmfs 2342 Oct  8 18:56 x86_64/intel/broadwell/modules/all/GROMACS/2023.1-foss-2022a.lua
-rw-r--r--. 1 cvmfs cvmfs 2344 Oct  8 18:55 x86_64/intel/cascadelake/modules/all/GROMACS/2023.1-foss-2022a.lua
-rw-r--r--. 1 cvmfs cvmfs 2347 Oct  8 19:02 x86_64/intel/skylake_avx512/modules/all/GROMACS/2023.1-foss-2022a.lua

aarch64/generic/software/GROMACS/2023.1-foss-2022a:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Oct  8 20:17 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Oct  8 20:20 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:28 include
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 20:17 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Oct  8 20:19 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:28 share

x86_64/amd/zen2/software/GROMACS/2023.1-foss-2022a:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Oct  8 12:42 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Oct  8 12:44 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 11:39 include
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 12:42 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Oct  8 12:43 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 11:39 share

x86_64/generic/software/GROMACS/2023.1-foss-2022a:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Oct  8 18:53 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Oct  8 18:55 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:20 include
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:53 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Oct  8 18:54 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:20 share

x86_64/intel/broadwell/software/GROMACS/2023.1-foss-2022a:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Oct  8 18:54 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Oct  8 18:56 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:11 include
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:54 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Oct  8 18:55 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:11 share

x86_64/intel/cascadelake/software/GROMACS/2023.1-foss-2022a:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Oct  8 18:54 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Oct  8 18:55 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:19 include
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:55 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Oct  8 18:55 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:19 share

x86_64/intel/skylake_avx512/software/GROMACS/2023.1-foss-2022a:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Oct  8 19:01 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Oct  8 19:02 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:16 include
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 19:01 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Oct  8 19:02 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 Oct  8 18:16 share

{2023.06}[foss/2022a] GROMACS V2023.1

69041b0

TopRichard added the NESSI/2023.06 label Oct 5, 2023

sync local branch with target

3187f3f

TopRichard added the bot:deploy label Oct 9, 2023

TopRichard added the ingested label Oct 9, 2023

TopRichard requested a review from justadejavu October 9, 2023 06:40

justadejavu approved these changes Oct 9, 2023

View reviewed changes

TopRichard merged commit 94bd334 into NorESSI:nessi.no-2023.06 Oct 9, 2023
72 of 73 checks passed

{2023.06}[foss/2022a] GROMACS V2023.1 #178

{2023.06}[foss/2022a] GROMACS V2023.1 #178

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