{2023.06}[foss/2022a] GROMACS V2023.1 #608
Workflow file for this run
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| # documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions | |
| name: Tests relying on having EESSI pilot repo mounted | |
| on: [push, pull_request, workflow_dispatch] | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| jobs: | |
| pilot: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| EESSI_VERSION: | |
| - 2023.06 | |
| EESSI_SOFTWARE_SUBDIR: | |
| - aarch64/generic | |
| - x86_64/amd/zen2 | |
| - x86_64/intel/broadwell | |
| - x86_64/intel/cascadelake | |
| - x86_64/intel/skylake_avx512 | |
| - x86_64/generic | |
| EASYSTACK_FILE: | |
| - eessi-2023.06-eb-4.7.2-2021a.yml | |
| - eessi-2023.06-eb-4.7.2-2021b.yml | |
| - eessi-2023.06-eb-4.7.2-2022a.yml | |
| - eessi-2023.06-eb-4.7.2-2022b.yml | |
| - eessi-2023.06-eb-4.7.2-system.yml | |
| - eessi-2023.06-eb-4.8.0-system.yml | |
| - eessi-2023.06-eb-4.8.1-2022a.yml | |
| - eessi-2023.06-eb-4.8.1-system.yml | |
| steps: | |
| - name: Check out software-layer repository | |
| uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0 | |
| - name: Mount EESSI CernVM-FS pilot repository | |
| uses: cvmfs-contrib/github-action-cvmfs@d4641d0d591c9a5c3be23835ced2fb648b44c04b # v3.1 | |
| with: | |
| cvmfs_config_package: https://github.com/NorESSI/filesystem-layer/releases/download/latest/cvmfs-config-nessi_latest_all.deb | |
| cvmfs_http_proxy: DIRECT | |
| cvmfs_repositories: pilot.nessi.no | |
| - name: Test check_missing_installations.sh script with EESSI_SOFTWARE_SUBDIR_OVERRIDE | |
| if: '!cancelled()' | |
| run: | | |
| export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR}} | |
| source /cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}/init/bash | |
| module load EasyBuild | |
| eb --version | |
| export EESSI_PREFIX=/cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}} | |
| export EESSI_OS_TYPE=linux | |
| env | grep ^EESSI | sort | |
| echo "just run check_missing_installations.sh (should use ${{matrix.EASYSTACK_FILE}})" | |
| ./check_missing_installations.sh ${{matrix.EASYSTACK_FILE}} | |
| - name: Test check_missing_installations.sh script without EESSI_SOFTWARE_SUBDIR_OVERRIDE | |
| if: '!cancelled()' | |
| run: | | |
| source /cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}/init/bash | |
| module load EasyBuild | |
| eb --version | |
| export EESSI_PREFIX=/cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}} | |
| export EESSI_OS_TYPE=linux | |
| export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}} | |
| env | grep ^EESSI | sort | |
| echo "just run check_missing_installations.sh (should use ${{matrix.EASYSTACK_FILE}})" | |
| ./check_missing_installations.sh ${{matrix.EASYSTACK_FILE}} | |
| - name: Test check_missing_installations.sh with missing package (GCC/8.3.0) | |
| if: '!cancelled()' | |
| run: | | |
| source /cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}/init/bash | |
| module load EasyBuild | |
| which eb | |
| eb --version | |
| export EESSI_PREFIX=/cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}} | |
| export EESSI_OS_TYPE=linux | |
| export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}} | |
| env | grep ^EESSI | sort | |
| # create dummy easystack file with a single entry (something that is not installed in EESSI) | |
| easystack_file="test.yml" | |
| echo "easyconfigs:" > ${easystack_file} | |
| echo " - GCC-8.3.0:" >> ${easystack_file} | |
| echo "created easystack file '${easystack_file}' with a missing installation (GCC/8.3.0):" | |
| cat ${easystack_file} | |
| # note, check_missing_installations.sh exits 1 if a package was | |
| # missing, which is intepreted as false (exit code based, not | |
| # boolean logic), hence when the script exits 0 if no package was | |
| # missing it is interpreted as true, thus the test did not capture | |
| # the missing package | |
| if ./check_missing_installations.sh ${easystack_file}; then | |
| echo "did NOT capture missing package; test FAILED" | |
| exit 1 | |
| else | |
| echo "captured missing package; test PASSED" | |
| exit 0 | |
| fi |