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{2023.06}[foss/2022a] bio packages - set 1 #536

{2023.06}[foss/2022a] bio packages - set 1

{2023.06}[foss/2022a] bio packages - set 1 #536

Workflow file for this run

# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Tests for init scripts
on: [push, pull_request]
permissions:
contents: read # to fetch code (actions/checkout)
jobs:
build:
runs-on: ubuntu-20.04
strategy:
matrix:
python: [3.6, 3.7, 3.8, 3.9, '3.10']
fail-fast: false
steps:
- name: checkout
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0
- name: set up Python
uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # v4.3.0
with:
python-version: ${{matrix.python}}
architecture: x64
- name: install Python packages
run: |
pip install archspec pytest
- name: unit tests for eessi_software_subdir_for_host.py script
run:
pytest -v init/test.py
- name: test eessi_software_subdir_for_host.py script
env:
EESSI_X86_64: /tmp/EESSI/software/linux/x86_64
run: |
mkdir -p ${EESSI_X86_64}/intel/{pentium4,sandybridge,haswell,skylake_avx512} ${EESSI_X86_64}/generic
python3 ./init/eessi_software_subdir_for_host.py /tmp/EESSI > out.txt
grep '^x86_64/' out.txt
# check override via $EESSI_SOFTWARE_SUBDIR_OVERRIDE
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=x86_64/intel/pentium4
python3 ./init/eessi_software_subdir_for_host.py /tmp/EESSI > out.txt
grep '^x86_64/intel/pentium4$' out.txt