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{2023.06} comment *-from-pr & sync with EESSI/2023.06 #29

{2023.06} comment *-from-pr & sync with EESSI/2023.06

{2023.06} comment *-from-pr & sync with EESSI/2023.06 #29

Workflow file for this run

# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Tests for scripts
on:
push:
paths:
- build_container.sh
- create_directory_tarballs.sh
- EESSI-pilot-install-software.sh
- install_software_layer.sh
- load_easybuild_module.sh
- run_in_compat_layer_env.sh
- scripts/utils.sh
- update_lmod_cache.sh
pull_request:
paths:
- build_container.sh
- create_directory_tarballs.sh
- EESSI-pilot-install-software.sh
- install_software_layer.sh
- load_easybuild_module.sh
- run_in_compat_layer_env.sh
- scripts/utils.sh
- update_lmod_cache.sh
permissions:
contents: read # to fetch code (actions/checkout)
jobs:
build:
runs-on: ubuntu-20.04
steps:
- name: checkout
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0
- name: install Apptainer
run: |
./install_apptainer_ubuntu.sh
- name: test load_easybuild_module.sh script
run: |
# bind current directory into container as /software-layer
export SINGULARITY_BIND="${PWD}:/software-layer"
# can't test with EasyBuild versions older than v4.5.2 when using EESSI pilot 2023.06,
# since Python in compat layer is Python 3.11.x;
# testing with a single EasyBuild version takes a while in GitHub Actions, so stick to a single sensible version
for EB_VERSION in '4.6.0'; do
# Create script that uses load_easybuild_module.sh which we can run in compat layer environment
# note: Be careful with single vs double quotes below!
# ${EB_VERSION} should be expanded, so use double quotes;
# For statements using variables that are only defined in the script, like ${EASYBUILD_INSTALLPATH},
# use single quotes to avoid expansion while creating the script.
test_script="${PWD}/eb-${EB_VERSION}.sh"
echo '#!/bin/bash' > ${test_script}
# both $EB and $TMPDIR environment must be set, required by load_easybuild_module.sh script
echo 'export EB="eb"' >> ${test_script}
echo 'export TMPDIR=$(mktemp -d)' >> ${test_script}
# set up environment to have utility functions in place that load_easybuild_module.sh script relies on,
# along with $EESSI_* environment variables, and Lmod
echo 'ls -l /software-layer/' >> ${test_script}
echo 'source /software-layer/scripts/utils.sh' >> ${test_script}
echo 'source /software-layer/init/eessi_environment_variables' >> ${test_script}
echo 'source ${EPREFIX}/usr/share/Lmod/init/bash' >> ${test_script}
# minimal configuration for EasyBuild so we can test installation aspect of load_easybuild_module.sh script
echo "export EASYBUILD_INSTALLPATH=/tmp/eb-${EB_VERSION}" >> ${test_script}
echo 'module use ${EASYBUILD_INSTALLPATH}/modules/all' >> ${test_script}
echo '' >> ${test_script}
echo "source /software-layer/load_easybuild_module.sh ${EB_VERSION}" >> ${test_script}
echo 'module list' >> ${test_script}
echo 'eb --version' >> ${test_script}
chmod u+x ${test_script}
# run wrapper script + capture & check output
out="${PWD}/eb-${EB_VERSION}.out"
./eessi_container.sh --access rw --mode run --verbose /software-layer/run_in_compat_layer_env.sh /software-layer/eb-${EB_VERSION}.sh 2>&1 | tee ${out}
pattern="^This is EasyBuild ${EB_VERSION} "
grep "${pattern}" ${out} || (echo "Pattern '${pattern}' not found in output!" && exit 1)
done
- name: test install_software_layer.sh script
run: |
# scripts need to be copied to /tmp,
# since install_software_layer.sh must be accessible from within build container
cp -a * /tmp/
cd /tmp
# force using x86_64/generic, to avoid triggering an installation from scratch
sed -i "s@./EESSI-pilot-install-software.sh@\"export EESSI_SOFTWARE_SUBDIR_OVERRIDE='x86_64/generic'; ./EESSI-pilot-install-software.sh\"@g" install_software_layer.sh
./build_container.sh run /tmp/$USER/EESSI /tmp/install_software_layer.sh
- name: test create_directory_tarballs.sh script
run: |
# scripts need to be copied to /tmp,
# since create_directory_tarballs.sh must be accessible from within build container
cp -a * /tmp/
cd /tmp
./build_container.sh run /tmp/$USER/EESSI /tmp/create_directory_tarballs.sh 2023.06
# check if tarballs have been produced
ls -l *.tar.gz