Fixed add_spectrum tests

Noble-Lab · Dec 8, 2020 · 5525da2 · 5525da2
1 parent 919714e
commit 5525da2
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Showing 4 changed files with 8 additions and 6 deletions.
diff --git a/README.md b/README.md
@@ -1,5 +1,7 @@
 <img src="https://github.com/Noble-Lab/crema/blob/master/docs/_static/crema_logo_caramel_light.png" width=300>  
 
+---
+
 Confidence Estimation for Mass Spectrometry Proteomics
 
 **crema** is a Python package that implements various methods to estimate false discovery rates (FDR) of peptide

diff --git a/crema/__pycache__/params.cpython-37.pyc b/crema/__pycache__/params.cpython-37.pyc
diff --git a/tests/test_cli.py b/tests/test_cli.py
@@ -171,7 +171,7 @@ def test_cli_add_spectrum(tmp_path):
     cmd = [
         "crema",
         "data/single_add_spectrum.csv",
-        "--scan",
+        "--spectrum",
         "scan",
         "extras",
         "--output_dir",

diff --git a/tests/test_crema_methods.py b/tests/test_crema_methods.py
@@ -148,11 +148,11 @@
             "c",
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         ],
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 )
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                 "c",
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+                "z",
+                "b",
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             ],
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     )
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