Code

Eliminate evaluate Command#359

Code

Merged

Lilferrit merged 45 commits intodevNoble-Lab/casanovo:devfrom elim-evalNoble-Lab/casanovo:elim-evalCopy head branch name to clipboardAug 21, 2024

+550-372

Commits

Commits on Jul 30, 2024

• prediction output in model eval mode

  Lilferrit

  committed
  4e24904

• eliminate eval command, introduce -e flag for predict command

  Lilferrit

  committed
  82018cf

Commits on Jul 31, 2024

• adapted unit test to new model runner and model functionality

  Lilferrit

  committed
  c59edce

• updated documentation

  Lilferrit

  committed
  b9f843a

• removed log and result files

  Lilferrit

  committed
  6716db6

• Generate new screengrabs with rich-codex

  github-actions[bot]

  committed
  dccb729

Commits on Aug 2, 2024

• Update paper reference (#361)

  bittremieux

  authored
  5879b0a

Commits on Aug 6, 2024

• Bug report template (#360)

  Show description for f792527
  

  bittremieux

  and

  Lilferrit

  authored
  f792527

• upgrade codecove to v4 (#364)

  Lilferrit

  authored
  bf1e5a3

• implemen eval mode at model runner level, fix unit test

  Lilferrit

  committed
  4c14b94

• merge dev

  Lilferrit

  committed
  8d3ceba

• CLI documentation

  Lilferrit

  committed
  0862a7c

• Generate new screengrabs with rich-codex

  github-actions[bot]

  committed
  8461608

• Merge branch 'main' into elim-eval

  Lilferrit

  committed
  059119e

• Merge branch 'elim-eval' of github.com:Noble-Lab/casanovo into elim-eval

  Lilferrit

  committed
  87ad500

Commits on Aug 7, 2024

• merge conflict

  Lilferrit

  committed
  a2b50c1

• requested changes

  Lilferrit

  committed
  148d32a

• Generate new screengrabs with rich-codex

  github-actions[bot]

  committed
  1981f13

• evaluation test cases

  Lilferrit

  committed
  6ffa3f8

Commits on Aug 8, 2024

• file warnings, evaluation tests

  Lilferrit

  committed
  8174ee5

• Merge branch 'elim-eval' of github.com:Noble-Lab/casanovo into elim-eval

  Lilferrit

  committed
  1aebc64

• fixed ubuntu specific test case bug

  Lilferrit

  committed
  81a3267

Commits on Aug 9, 2024

• verify annotated mgf files

  Lilferrit

  committed
  7b9557b

• verify annotated mgf files

  Lilferrit

  committed
  5dd591f

• Merge branch 'elim-eval' of github.com:Noble-Lab/casanovo into elim-eval

  Lilferrit

  committed
  9c90aee

• Merge branch 'elim-eval' of github.com:Noble-Lab/casanovo into elim-eval

  Lilferrit

  committed
  c188df3

• Generate new screengrabs with rich-codex

  github-actions[bot]

  committed
  4b3d1a4

• Merge branch 'elim-eval' of github.com:Noble-Lab/casanovo into elim-eval

  Lilferrit

  committed
  34fb4d1

Commits on Aug 12, 2024

• Save best model (#365)

  Show description for ba58668
  Lilferrit

  authored
  ba58668

• prediction output in model eval mode

  Lilferrit

  committed
  bd8ceba

• eliminate eval command, introduce -e flag for predict command

  Lilferrit

  committed
  d4326b1

• adapted unit test to new model runner and model functionality

  Lilferrit

  committed
  b43121e

• updated documentation

  Lilferrit

  committed
  d9b6f48

• removed log and result files

  Lilferrit

  committed
  f441034

• implemen eval mode at model runner level, fix unit test

  Lilferrit

  committed
  cd9bfe5

• CLI documentation

  Lilferrit

  committed
  5cb3e21

• Bug report template (#360)

  Show description for 0bb617d
  

  bittremieux

  and

  Lilferrit

  committed
  0bb617d

• requested changes

  Lilferrit

  committed
  7be64ed

• evaluation test cases

  Lilferrit

  committed
  b5862b5

• file warnings, evaluation tests

  Lilferrit

  committed
  d20494c

• fixed ubuntu specific test case bug

  Lilferrit

  committed
  9647321

• verify annotated mgf files

  Lilferrit

  committed
  c4cd147

• removed mgf annotation verification

  Lilferrit

  committed
  31cc133

Commits on Aug 14, 2024

• AnnotatedSpectrumIndex type error

  Lilferrit

  committed
  695c739

Commits on Aug 20, 2024

• requested changes, changelog entry

  Lilferrit

  committed
  2d882b7