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Update docs for Casanovo-DB #653

Update docs for Casanovo-DB

Update docs for Casanovo-DB #653

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: tests
on:
push:
branches:
- main
- dev
pull_request:
branches:
- main
- dev
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, windows-latest, macos-13]
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.10
uses: actions/setup-python@v5
with:
python-version: "3.10"
- name: Set up Java
uses: actions/setup-java@v3
with:
distribution: 'zulu'
java-version: '22'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 pytest pytest-cov wheel
pip install -e .[dev]
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Run unit and system tests
run: |
pytest --cov=casanovo tests/
- name: Upload coverage to codecov
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
fail_ci_if_error: true