Code

Improving spDCM tutorial#500

Code

Merged

hstrey merged 63 commits intomasterNeuroblox/Neuroblox.jl:masterfrom spDCM_tutorial_revisionsNeuroblox/Neuroblox.jl:spDCM_tutorial_revisionsCopy head branch name to clipboardJan 3, 2025

+48-35

Commits

Commits on Nov 13, 2024

• updated CMC code (#474)

  Show description for 8571333
  

  david-hofmann

  and

  harisorgn

  committed
  8571333

• removed some wrong lines that resulted from a rebase

  david-hofmann

  committed
  cac1cfb

Commits on Dec 10, 2024

• Changing edges to standard nomenclature.

  david-hofmann

  committed
  94f9528

Commits on Jan 2, 2025

• change of time scale from seconds to milliseconds

  david-hofmann

  committed
  c50a013

• bump GraphDynamics compat (#491)

  

  MasonProtter

  authored and

  david-hofmann

  committed
  94cced3

• Add decision making example (#492)

  Show description for b76346f
  

  harisorgn

  authored and

  david-hofmann

  committed
  b76346f

• Update README.md

  

  hstrey

  authored and

  david-hofmann

  committed
  f05b77c

• Update README.md

  

  hstrey

  authored and

  david-hofmann

  committed
  a290c65

• remove jcn=0 pattern from discrete blox

  

  MasonProtter

  authored and

  david-hofmann

  committed
  e530554

• Fix CI errors from jcn variables being set with initial conditions (#494)

  Show description for 821655d
  

  2 peopleauthored and

  david-hofmann

  committed
  821655d

• Update README.md

  Show description for 50cab67
  

  helmutstrey

  authored and

  david-hofmann

  committed
  50cab67

• added plots to GUI's plotdetail

  

  helmutstrey

  authored and

  david-hofmann

  committed
  91cd7af

• added more regions

  

  helmutstrey

  authored and

  david-hofmann

  committed
  2a9e1fc

• add plotdetail properly

  

  helmutstrey

  authored and

  david-hofmann

  committed
  7e114ad

• Bump MTK compat (#497)

  Show description for 014e485
  

  MasonProtter

  authored and

  david-hofmann

  committed
  014e485

• Firing rate cleaning (#496)

  Show description for 34b2cc8
  

  gabrevaya

  authored and

  david-hofmann

  committed
  34b2cc8

• address Scott’s feedback on the basal ganglia tutorial (#498)

  Show description for 95df12d
  

  gabrevaya

  authored and

  david-hofmann

  committed
  95df12d

• Plot recipes improvements (#495)

  Show description for 87344a3
  

  gabrevaya

  authored and

  david-hofmann

  committed
  87344a3

• Change BloxConnector to Connector (#502)

  Show description for 0b321a9
  

  harisorgn

  authored and

  david-hofmann

  committed
  0b321a9

• Improve show for Connector objects (#503)

  Show description for b8778b4
  

  harisorgn

  authored and

  david-hofmann

  committed
  b8778b4

• Switch Connector fields from Vector{Vector{...}} to Vector{...} (#504)

  Show description for c00d823
  

  harisorgn

  authored and

  david-hofmann

  committed
  c00d823

• Generic Connector dispatch (#505)

  Show description for 888f692
  

  harisorgn

  authored and

  david-hofmann

  committed
  888f692

• Replace output field with MTK.outputs function and cleanup (#507)

  Show description for fc3af35
  

  harisorgn

  authored and

  david-hofmann

  committed
  fc3af35

• filter out empty spike affects (#508)

  

  harisorgn

  authored and

  david-hofmann

  committed
  3461c2f

• Add PoissonSpikeTrain to Connector.spike_affects collection and improve its UI (#509)

  Show description for 358d4f7
  

  harisorgn

  authored and

  david-hofmann

  committed
  358d4f7

• add simple stimulus example (#511)

  

  gabrevaya

  authored and

  david-hofmann

  committed
  b9d93e2

• More UI fixes & improvements for IAP course (#513)

  Show description for bd035af
  

  harisorgn

  authored and

  david-hofmann

  committed
  bd035af

• added Plotsettings tab in GUI.jl

  

  helmutstrey

  authored and

  david-hofmann

  committed
  4d32499

• moved plot options to Sim

  

  helmutstrey

  authored and

  david-hofmann

  committed
  157e57c

• Switch QIF neurons to use discrete events (#514)

  Show description for 5b0d781
  

  MasonProtter

  authored and

  david-hofmann

  committed
  5b0d781

• print to the passed IO explicitly (#515)

  

  harisorgn

  authored and

  david-hofmann

  committed
  988c183

• added adj to special plot options

  

  helmutstrey

  authored and

  david-hofmann

  committed
  65401c1

• Making code consistent with SPM25 (#501)

  Show description for 2f70c55
  david-hofmann

  committed
  2f70c55

• updated CMC code (#474)

  Show description for 37f24ee
  

  david-hofmann

  and

  harisorgn

  committed
  37f24ee

• removed some wrong lines that resulted from a rebase

  david-hofmann

  committed
  cee545e

• fixed effective connectivity recipe

  david-hofmann

  committed
  ccfa6f6

• added some more explanator text

  david-hofmann

  committed
  f684484

• fixed readme

  david-hofmann

  committed
  3c99dfa

• Update README.md

  

  hstrey

  authored and

  david-hofmann

  committed
  dd54144

• remove jcn=0 pattern from discrete blox

  

  MasonProtter

  authored and

  david-hofmann

  committed
  fb4a2c2

• Fix CI errors from jcn variables being set with initial conditions (#494)

  Show description for f5004c0
  

  2 peopleauthored and

  david-hofmann

  committed
  f5004c0

• added plots to GUI's plotdetail

  

  helmutstrey

  authored and

  david-hofmann

  committed
  babdf2e

• added more regions

  

  helmutstrey

  authored and

  david-hofmann

  committed
  9c5dc36

• Bump MTK compat (#497)

  Show description for a25362e
  

  MasonProtter

  authored and

  david-hofmann

  committed
  a25362e

• Change BloxConnector to Connector (#502)

  Show description for e2fab04
  

  harisorgn

  authored and

  david-hofmann

  committed
  e2fab04

• Improve show for Connector objects (#503)

  Show description for 25245b3
  

  harisorgn

  authored and

  david-hofmann

  committed
  25245b3

• Switch Connector fields from Vector{Vector{...}} to Vector{...} (#504)

  Show description for 9b24eac
  

  harisorgn

  authored and

  david-hofmann

  committed
  9b24eac

• Generic Connector dispatch (#505)

  Show description for eb95919
  

  harisorgn

  authored and

  david-hofmann

  committed
  eb95919

Commits on Jan 3, 2025

• Replace output field with MTK.outputs function and cleanup (#507)

  Show description for a997406
  

  harisorgn

  authored and

  david-hofmann

  committed
  a997406

• filter out empty spike affects (#508)

  

  harisorgn

  authored and

  david-hofmann

  committed
  a77fd99

• Add PoissonSpikeTrain to Connector.spike_affects collection and improve its UI (#509)

  Show description for b335382
  

  harisorgn

  authored and

  david-hofmann

  committed
  b335382

• More UI fixes & improvements for IAP course (#513)

  Show description for a09dfa7
  

  harisorgn

  authored and

  david-hofmann

  committed
  a09dfa7

• added Plotsettings tab in GUI.jl

  

  helmutstrey

  authored and

  david-hofmann

  committed
  bb8b537

• moved plot options to Sim

  

  helmutstrey

  authored and

  david-hofmann

  committed
  062545c

• Switch QIF neurons to use discrete events (#514)

  Show description for 60de89f
  

  MasonProtter

  authored and

  david-hofmann

  committed
  60de89f

• print to the passed IO explicitly (#515)

  

  harisorgn

  authored and

  david-hofmann

  committed
  09c7298

• added adj to special plot options

  

  helmutstrey

  authored and

  david-hofmann

  committed
  86c06db

• Making code consistent with SPM25 (#501)

  Show description for 69f5644
  david-hofmann

  committed
  69f5644

• start learning tutorial (#480)

  Show description for ce4a67f
  

  3 peopleauthored and

  david-hofmann

  committed
  ce4a67f

• added an option for Neuron selection

  

  helmutstrey

  authored and

  david-hofmann

  committed
  cc84a44

• updated to 0.5.2

  

  helmutstrey

  authored and

  david-hofmann

  committed
  a0b45b8

• Added more comments to the tutorial documentation

  david-hofmann

  committed
  0d79b0d

• Merge branch 'master' into spDCM_tutorial_revisions

  david-hofmann

  authored
  0b5dc39