Raise cli errors with full stack trace

[hemildesai]

No description provided.

[skothenhill-nv]

Thanks for this, the error message when a factory is ill typed is still incorrect I believe. In the example below we get:

(repeats)

ERROR:nemo_run.cli.cli_parser:Error processing argument 'Error parsing argument: Failed to parse 'simple_recipe' as <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>: Unsupported type: <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>

But I would have expected the Unsupprted type message to say OtherCfg. Looking at the call stack it seems like the value in annotation is of the underlying entrypoing and not the return signature of the factory.

Expected:

ERROR:nemo_run.cli.cli_parser:Error processing argument 'Error parsing argument: Failed to parse 'simple_recipe' as <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>: Unsupported type: <class 'bionemo.geneformer.run.exploring_factories.OtherCfg'>

Simple example to reproduce:

factories.py

@dataclass
class SimpleCfg:
    field1: str
@dataclass 
class OtherCfg:
    field1: int

@run.cli.factory
@run.autoconvert
def simple_cfg_recipe() -> SimpleCfg:
    return SimpleCfg('1')
@run.cli.factory
@run.autoconvert
def other_cfg_recipe() -> OtherCfg:
    return OtherCfg(1)

@run.cli.entrypoint
def simple_entry(simple_cfg: SimpleCfg):
    print(simple_cfg)

main.py

if __name__ == "__main__":
    run.cli.main(simple_entry)

python main.py simple_cfg=other_cfg_recipe

bionemo@131abe601699:/workspaces/bionemo-fw-ea$ python sub-packages/bionemo-geneformer/src/bionemo/geneformer/run/test3.py simple_cfg=other_cfg_recipe.py
ERROR:nemo_run.cli.cli_parser:Error processing argument 'Error parsing argument: Failed to parse 'other_cfg_recipe.py' as <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>: Unsupported type: <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'> (Argument: other_cfg_recipe.py, Context: {'expected_type': <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>})': Failed to parse 'Error parsing argument: Failed to parse 'other_cfg_recipe.py' as <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>: Unsupported type: <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'> (Argument: other_cfg_recipe.py, Context: {'expected_type': <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>})' as simple_cfg=other_cfg_recipe.py: {'key': 'simple_cfg', 'value': 'other_cfg_recipe.py', 'expected_type': <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>} (Argument: Error parsing argument: Failed to parse 'other_cfg_recipe.py' as <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>: Unsupported type: <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'> (Argument: other_cfg_recipe.py, Context: {'expected_type': <class 'bionemo.geneformer.run.exploring_factories.SimpleCfg'>}), Context: {'expected_type': 'simple_cfg=other_cfg_recipe.py'})

[hemildesai]

Thanks for this, the error message when a factory is ill typed is still incorrect I believe. In the example below we get:

Thanks for the detailed report, we'll work on fixing this in a subsequent PR. I've created an issue for it at #60

[ethanhe42]

thanks! verified on my side it works well.