[uwtools_integration] Integrate run_fcst (#271)

These changes allow the forecast to be configured and run by UW Tools.
NOAA-GSL · Dec 3, 2024 · 089881b · 089881b
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diff --git a/parm/FV3.input.yml b/parm/FV3.input.yml
diff --git a/parm/diag_table.FV3_GFS_v15_thompson_mynn_lam3km b/parm/diag_table.FV3_GFS_v15_thompson_mynn_lam3km
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 #output files
 "grid_spec",              -1,  "months",   1, "days",  "time"

diff --git a/parm/diag_table.FV3_GFS_v15p2 b/parm/diag_table.FV3_GFS_v15p2
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 "grid_spec",              -1,  "months",  1, "days",  "time"
 "atmos_4xdaily",           6,  "hours",   1, "days",  "time"

diff --git a/parm/diag_table.FV3_GFS_v16 b/parm/diag_table.FV3_GFS_v16
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 "grid_spec",              -1,  "months",  1, "days",  "time"
 "atmos_4xdaily",           6,  "hours",   1, "days",  "time"

diff --git a/parm/diag_table.FV3_GFS_v17_p8 b/parm/diag_table.FV3_GFS_v17_p8
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 #output files
 "grid_spec",              -1,  "months",   1, "days",  "time"

diff --git a/parm/diag_table.FV3_HRRR b/parm/diag_table.FV3_HRRR
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 "grid_spec",              -1,  "months",  1, "days",  "time"
 "atmos_static",           -1,  "hours",   1, "hours", "time"

diff --git a/parm/diag_table.FV3_RAP b/parm/diag_table.FV3_RAP
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}   
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}   
 
 "grid_spec",              -1,  "months",   1, "days",  "time"
 "atmos_4xdaily",           6,  "hours",    1, "days",  "time"

diff --git a/parm/diag_table.FV3_RRFS_v1beta b/parm/diag_table.FV3_RRFS_v1beta
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 "grid_spec",              -1,  "months",   1, "days",  "time"
 "atmos_static",           -1,  "hours",    1, "hours", "time"

diff --git a/parm/diag_table.FV3_WoFS_v0 b/parm/diag_table.FV3_WoFS_v0
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 "grid_spec",              -1,  "months",   1, "days",  "time"
 "atmos_static",           -1,  "hours",    1, "hours", "time"

diff --git a/parm/diag_table_aqm.FV3_GFS_v15p2 b/parm/diag_table_aqm.FV3_GFS_v15p2
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 "grid_spec",              -1,  "months",  1, "days",  "time"
 #"atmos_4xdaily",           6,  "hours",   1, "days",  "time"

diff --git a/parm/diag_table_aqm.FV3_GFS_v16 b/parm/diag_table_aqm.FV3_GFS_v16
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 "grid_spec",              -1,  "months",  1, "days",  "time"
 #"atmos_4xdaily",           6,  "hours",   1, "days",  "time"

diff --git a/parm/diag_table_aqm.FV3_GFS_v17_p8 b/parm/diag_table_aqm.FV3_GFS_v17_p8
@@ -1,5 +1,5 @@
-{{ starttime.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
-{{ starttime.strftime("%Y %m %d %H %M %S") }}
+{{ cycle.strftime("%Y%m%d.%H") }}Z.{{ cres }}.32bit.non-hydro.regional
+{{ cycle.strftime("%Y %m %d %H %M %S") }}
 
 #output files
 "grid_spec",              -1,  "months",   1, "days",  "time"

diff --git a/parm/fixed_files_mapping.yaml b/parm/fixed_files_mapping.yaml
@@ -2,200 +2,35 @@ fixed_files:
   #
   #-----------------------------------------------------------------------
   #
-  # FV3_NML_VARNAME_TO_SFC_CLIMO_FIELD_MAPPING:
-  # This array is used to set some of the namelist variables in the forecast 
-  # model's namelist file that represent the relative or absolute paths of 
-  # various fixed files (the first column of the array, where columns are 
-  # delineated by the pipe symbol "|") to the full paths to surface climatology 
-  # files (on the native FV3-LAM grid) in the FIXlam directory derived from 
-  # the corresponding surface climatology fields (the second column of the 
-  # array).
+  # These are the names of the fields generated by the make_sfc_climo
+  # task.
   #
   #-----------------------------------------------------------------------
   #
-  FV3_NML_VARNAME_TO_SFC_CLIMO_FIELD_MAPPING: [
-  "FNALBC  | snowfree_albedo",
-  "FNALBC2 | facsf",
-  "FNTG3C  | substrate_temperature",
-  "FNVEGC  | vegetation_greenness",
-  "FNVETC  | vegetation_type",
-  "FNSOTC  | soil_type",
-  "FNVMNC  | vegetation_greenness",
-  "FNVMXC  | vegetation_greenness",
-  "FNSLPC  | slope_type",
-  "FNABSC  | maximum_snow_albedo"
-  ]
-
-  #
-  #-----------------------------------------------------------------------
-  #
-  # Set the array parameter containing the names of all the fields that the
-  # TN_MAKE_SFC_CLIMO task generates on the native FV3-LAM grid.
-  #
-  #-----------------------------------------------------------------------
-  #
-  SFC_CLIMO_FIELDS: [
-  "facsf",
-  "maximum_snow_albedo",
-  "slope_type",
-  "snowfree_albedo",
-  "soil_type",
-  "substrate_temperature",
-  "vegetation_greenness",
-  "vegetation_type",
-  ]
-
-  #
-  #-----------------------------------------------------------------------
-  #
-  # FNGLAC, ..., FNMSKH:
-  # Names of (some of the) global data files that are assumed to exist in 
-  # a system directory specified (this directory is machine-dependent; 
-  # the experiment generation scripts will set it and store it in the 
-  # variable FIXgsm).  These file names also appear directly in the forecast 
-  # model's input namelist file.
-  #
-  #-----------------------------------------------------------------------
-  #
-  FNGLAC: &FNGLAC "global_glacier.2x2.grb"
-  FNMXIC: &FNMXIC "global_maxice.2x2.grb"
-  FNTSFC: &FNTSFC "RTGSST.1982.2012.monthly.clim.grb"
-  FNSNOC: &FNSNOC "global_snoclim.1.875.grb"
-  FNZORC: &FNZORC "igbp"
-  FNAISC: &FNAISC "CFSR.SEAICE.1982.2012.monthly.clim.grb"
-  FNSMCC: &FNSMCC "global_soilmgldas.t126.384.190.grb"
-  FNMSKH: &FNMSKH "seaice_newland.grb"
-  #
-  #-----------------------------------------------------------------------
-  #
-  # FIXgsm_FILES_TO_COPY_TO_FIXam:
-  # If not running in NCO mode, this array contains the names of the files
-  # to copy from the FIXgsm system directory to the FIXam directory under
-  # the experiment directory.  Note that the last element has a dummy value.
-  # This last element will get reset by the workflow generation scripts to
-  # the name of the ozone production/loss file to copy from FIXgsm.  The
-  # name of this file depends on the ozone parameterization being used, 
-  # and that in turn depends on the CCPP physics suite specified for the 
-  # experiment.  Thus, the CCPP physics suite XML must first be read in to
-  # determine the ozone parameterizaton and then the name of the ozone 
-  # production/loss file.  These steps are carried out elsewhere (in one 
-  # of the workflow generation scripts/functions).
-  #
-  #-----------------------------------------------------------------------
-  #
-  FIXgsm_FILES_TO_COPY_TO_FIXam: [
-  *FNGLAC,
-  *FNMXIC,
-  *FNTSFC,
-  *FNSNOC,
-  *FNAISC,
-  *FNSMCC,
-  *FNMSKH,
-  "global_climaeropac_global.txt",
-  "fix_co2_proj/global_co2historicaldata_2010.txt",
-  "fix_co2_proj/global_co2historicaldata_2011.txt",
-  "fix_co2_proj/global_co2historicaldata_2012.txt",
-  "fix_co2_proj/global_co2historicaldata_2013.txt",
-  "fix_co2_proj/global_co2historicaldata_2014.txt",
-  "fix_co2_proj/global_co2historicaldata_2015.txt",
-  "fix_co2_proj/global_co2historicaldata_2016.txt",
-  "fix_co2_proj/global_co2historicaldata_2017.txt",
-  "fix_co2_proj/global_co2historicaldata_2018.txt",
-  "fix_co2_proj/global_co2historicaldata_2019.txt",
-  "fix_co2_proj/global_co2historicaldata_2020.txt",
-  "fix_co2_proj/global_co2historicaldata_2021.txt",
-  "global_co2historicaldata_glob.txt",
-  "co2monthlycyc.txt",
-  "global_h2o_pltc.f77",
-  "global_hyblev.l65.txt",
-  "global_zorclim.1x1.grb",
-  "global_sfc_emissivity_idx.txt",
-  "global_tg3clim.2.6x1.5.grb",
-  "global_solarconstant_noaa_an.txt",
-  "global_albedo4.1x1.grb",
-  "geo_em.d01.lat-lon.2.5m.HGT_M.nc",
-  "HGT.Beljaars_filtered.lat-lon.30s_res.nc",
-  "replace_with_FIXgsm_ozone_prodloss_filename"
-  ]
-  #
-  #-----------------------------------------------------------------------
-  #
-  # FV3_NML_VARNAME_TO_FIXam_FILES_MAPPING:
-  # This array is used to set some of the namelist variables in the forecast 
-  # model's namelist file that represent the relative or absolute paths of 
-  # various fixed files (the first column of the array, where columns are 
-  # delineated by the pipe symbol "|") to the full paths to these files in 
-  # the FIXam directory derived from the corresponding workflow variables 
-  # containing file names (the second column of the array).
-  #
-  #-----------------------------------------------------------------------
-  #
-  FV3_NML_VARNAME_TO_FIXam_FILES_MAPPING: [
-  !join_str ["FNGLAC | ",*FNGLAC],
-  !join_str ["FNMXIC | ",*FNMXIC],
-  !join_str ["FNTSFC | ",*FNTSFC],
-  !join_str ["FNSNOC | ",*FNSNOC],
-  !join_str ["FNAISC | ",*FNAISC],
-  !join_str ["FNSMCC | ",*FNSMCC],
-  !join_str ["FNMSKH | ",*FNMSKH]
-  ]
-
-  #
-  #-----------------------------------------------------------------------
-  #
-  # CYCLEDIR_LINKS_TO_FIXam_FILES_MAPPING:
-  # This array specifies the mapping to use between the symlinks that need
-  # to be created in each cycle directory (these are the "files" that FV3
-  # looks for) and their targets in the FIXam directory.  The first column
-  # of the array specifies the symlink to be created, and the second column
-  # specifies its target file in FIXam (where columns are delineated by the
-  # pipe symbol "|").
-  #
-  #-----------------------------------------------------------------------
-  #
-  CYCLEDIR_LINKS_TO_FIXam_FILES_MAPPING: [
-  "aerosol.dat                | global_climaeropac_global.txt",
-  "co2historicaldata_2010.txt | fix_co2_proj/global_co2historicaldata_2010.txt",
-  "co2historicaldata_2011.txt | fix_co2_proj/global_co2historicaldata_2011.txt",
-  "co2historicaldata_2012.txt | fix_co2_proj/global_co2historicaldata_2012.txt",
-  "co2historicaldata_2013.txt | fix_co2_proj/global_co2historicaldata_2013.txt",
-  "co2historicaldata_2014.txt | fix_co2_proj/global_co2historicaldata_2014.txt",
-  "co2historicaldata_2015.txt | fix_co2_proj/global_co2historicaldata_2015.txt",
-  "co2historicaldata_2016.txt | fix_co2_proj/global_co2historicaldata_2016.txt",
-  "co2historicaldata_2017.txt | fix_co2_proj/global_co2historicaldata_2017.txt",
-  "co2historicaldata_2018.txt | fix_co2_proj/global_co2historicaldata_2018.txt",
-  "co2historicaldata_2019.txt | fix_co2_proj/global_co2historicaldata_2019.txt",
-  "co2historicaldata_2020.txt | fix_co2_proj/global_co2historicaldata_2020.txt",
-  "co2historicaldata_2021.txt | fix_co2_proj/global_co2historicaldata_2021.txt",
-  "co2historicaldata_glob.txt | global_co2historicaldata_glob.txt",
-  "co2monthlycyc.txt          | co2monthlycyc.txt",
-  "global_h2oprdlos.f77       | global_h2o_pltc.f77",
-  "global_albedo4.1x1.grb     | global_albedo4.1x1.grb",
-  "global_zorclim.1x1.grb     | global_zorclim.1x1.grb",
-  "global_tg3clim.2.6x1.5.grb | global_tg3clim.2.6x1.5.grb",
-  "sfc_emissivity_idx.txt     | global_sfc_emissivity_idx.txt",
-  "solarconstant_noaa_an.txt  | global_solarconstant_noaa_an.txt",
-  "global_o3prdlos.f77        | ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77"
-  ]
+  SFC_CLIMO_FIELDS:
+    - facsf
+    - maximum_snow_albedo
+    - slope_type
+    - snowfree_albedo
+    - soil_type
+    - substrate_temperature
+    - vegetation_greenness
+    - vegetation_type
 
   #
   #-----------------------------------------------------------------------
   #
   # THOMPSON_FIX_FILES
-  # Thompson microphysics requires additional fix files at the run_fcst step,
-  # this array is appended to FIXgsm_FILES_TO_COPY_TO_FIXam at the workflow
-  # generation step. Since all these file names are the same when linked,
-  # appending CYCLEDIR_LINKS_TO_FIXam_FILES_MAPPING is handled in the
-  # generate_FV3LAM_wflow.py script. 
+  # Thompson microphysics requires additional fix files at the run_fcst
+  # step. Files named here are added to the fv3.files_to_link section at
+  # configuration time. They can be found in the FIXam directory.
   #
   #-----------------------------------------------------------------------
   #
-  THOMPSON_FIX_FILES: [
-  "CCN_ACTIVATE.BIN",
-  "freezeH2O.dat",
-  "qr_acr_qg.dat",
-  "qr_acr_qs.dat",
-  "qr_acr_qgV2.dat",
-  "qr_acr_qsV2.dat",
-  ]
-
+  THOMPSON_FIX_FILES:
+    - CCN_ACTIVATE.BIN
+    - freezeH2O.dat
+    - qr_acr_qg.dat
+    - qr_acr_qs.dat
+    - qr_acr_qgV2.dat
+    - qr_acr_qsV2.dat
diff --git a/parm/input.nml.FV3 b/parm/input.nml.FV3
@@ -197,15 +197,6 @@
     interp_method = 'conserve_great_circle'
 /
 
-&nam_sfcperts
-/
-
-&nam_sppperts
-/
-
-&nam_stochy
-/
-
 &namsfc
     fabsl = 99999
     faisl = 99999