fixing some typos, updating install info

NHERI-SimCenter · Jul 26, 2024 · c89e78a · c89e78a
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diff --git a/.idea/.gitignore b/.idea/.gitignore
diff --git a/.idea/SimCenterBootcamp2024.iml b/.idea/SimCenterBootcamp2024.iml
diff --git a/.idea/inspectionProfiles/Project_Default.xml b/.idea/inspectionProfiles/Project_Default.xml
diff --git a/.idea/inspectionProfiles/profiles_settings.xml b/.idea/inspectionProfiles/profiles_settings.xml
diff --git a/.idea/misc.xml b/.idea/misc.xml
diff --git a/.idea/modules.xml b/.idea/modules.xml
diff --git a/.idea/vcs.xml b/.idea/vcs.xml
diff --git a/docs/.buildinfo b/docs/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 28c66c38aaed0a9d4651d087a19e23c5
+config: dbd60fef3f3505ea96be3cb9252377a9
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/.doctrees/.special.doctree b/docs/.doctrees/.special.doctree
diff --git a/docs/.doctrees/environment.pickle b/docs/.doctrees/environment.pickle
diff --git a/docs/.doctrees/index.doctree b/docs/.doctrees/index.doctree
diff --git a/docs/.doctrees/source/.special.doctree b/docs/.doctrees/source/.special.doctree
diff --git a/docs/.doctrees/source/GUI.doctree b/docs/.doctrees/source/GUI.doctree
diff --git a/docs/.doctrees/source/TACC.doctree b/docs/.doctrees/source/TACC.doctree
diff --git a/docs/.doctrees/source/assignmentPreC.doctree b/docs/.doctrees/source/assignmentPreC.doctree
diff --git a/docs/.doctrees/source/assignment_C1.doctree b/docs/.doctrees/source/assignment_C1.doctree
diff --git a/docs/.doctrees/source/assignment_C2.doctree b/docs/.doctrees/source/assignment_C2.doctree
diff --git a/docs/.doctrees/source/assignment_C2_solution.doctree b/docs/.doctrees/source/assignment_C2_solution.doctree
diff --git a/docs/.doctrees/source/assignment_C3.doctree b/docs/.doctrees/source/assignment_C3.doctree
diff --git a/docs/.doctrees/source/assignment_C4.doctree b/docs/.doctrees/source/assignment_C4.doctree
diff --git a/docs/.doctrees/source/assignment_C4_solution.doctree b/docs/.doctrees/source/assignment_C4_solution.doctree
diff --git a/docs/.doctrees/source/assignment_C5.doctree b/docs/.doctrees/source/assignment_C5.doctree
diff --git a/docs/.doctrees/source/assignment_day1.doctree b/docs/.doctrees/source/assignment_day1.doctree
diff --git a/docs/.doctrees/source/assignment_day2.doctree b/docs/.doctrees/source/assignment_day2.doctree
diff --git a/docs/.doctrees/source/assignment_day3.doctree b/docs/.doctrees/source/assignment_day3.doctree
diff --git a/docs/.doctrees/source/assignment_day4.doctree b/docs/.doctrees/source/assignment_day4.doctree
diff --git a/docs/.doctrees/source/assignment_day5.doctree b/docs/.doctrees/source/assignment_day5.doctree
diff --git a/docs/.doctrees/source/assignments.doctree b/docs/.doctrees/source/assignments.doctree
diff --git a/docs/.doctrees/source/cmake.doctree b/docs/.doctrees/source/cmake.doctree
diff --git a/docs/.doctrees/source/computer.doctree b/docs/.doctrees/source/computer.doctree
diff --git a/docs/.doctrees/source/emacs.doctree b/docs/.doctrees/source/emacs.doctree
diff --git a/docs/.doctrees/source/git.doctree b/docs/.doctrees/source/git.doctree
diff --git a/docs/.doctrees/source/help.doctree b/docs/.doctrees/source/help.doctree
diff --git a/docs/.doctrees/source/index.doctree b/docs/.doctrees/source/index.doctree
diff --git a/docs/.doctrees/source/install_issues.doctree b/docs/.doctrees/source/install_issues.doctree
diff --git a/docs/.doctrees/source/lecture_videos.doctree b/docs/.doctrees/source/lecture_videos.doctree
diff --git a/docs/.doctrees/source/lecture_videos_part0.doctree b/docs/.doctrees/source/lecture_videos_part0.doctree
diff --git a/docs/.doctrees/source/lecture_videos_part1.doctree b/docs/.doctrees/source/lecture_videos_part1.doctree
diff --git a/docs/.doctrees/source/lecture_videos_part1b.doctree b/docs/.doctrees/source/lecture_videos_part1b.doctree
diff --git a/docs/.doctrees/source/lecture_videos_part2.doctree b/docs/.doctrees/source/lecture_videos_part2.doctree
diff --git a/docs/.doctrees/source/lecture_videos_part2_FINAL.doctree b/docs/.doctrees/source/lecture_videos_part2_FINAL.doctree
diff --git a/docs/.doctrees/source/lecture_videos_part3.doctree b/docs/.doctrees/source/lecture_videos_part3.doctree
diff --git a/docs/.doctrees/source/mathematics.doctree b/docs/.doctrees/source/mathematics.doctree
diff --git a/docs/.doctrees/source/programming_challenge.doctree b/docs/.doctrees/source/programming_challenge.doctree
diff --git a/docs/.doctrees/source/resources.doctree b/docs/.doctrees/source/resources.doctree
diff --git a/docs/.doctrees/source/setupInstructions.doctree b/docs/.doctrees/source/setupInstructions.doctree
diff --git a/docs/.doctrees/source/syllabus.doctree b/docs/.doctrees/source/syllabus.doctree
diff --git a/docs/.doctrees/source/syllabus_by_day.doctree b/docs/.doctrees/source/syllabus_by_day.doctree
diff --git a/docs/.doctrees/source/syllabus_by_topic.doctree b/docs/.doctrees/source/syllabus_by_topic.doctree
diff --git a/docs/.doctrees/source/tapis.doctree b/docs/.doctrees/source/tapis.doctree
diff --git a/docs/.doctrees/source/tools.doctree b/docs/.doctrees/source/tools.doctree
diff --git a/docs/.special.html b/docs/.special.html
@@ -1,96 +1,54 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html5" lang="en" data-content_root="./">
 <head>
-  <meta charset="utf-8" />
-  
+  <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-
   <title>&lt;no title&gt; &mdash; Programming Bootcamp 2024  documentation</title>
-
-
-
-  <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
-  <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
-  <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
-  <link rel="stylesheet" href="_static/css/hacks.css" type="text/css" />
-
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+      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
+      <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="_static/css/custom.css?v=079b110e" />
+      <link rel="stylesheet" type="text/css" href="_static/css/hacks.css?v=6658a5ce" />
 
 
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-
-      <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
-        <script src="_static/jquery.js"></script>
-        <script src="_static/underscore.js"></script>
-        <script src="_static/_sphinx_javascript_frameworks_compat.js"></script>
-        <script src="_static/doctools.js"></script>
-
-    <script type="text/javascript" src="_static/js/theme.js"></script>
-
-
+        <script src="_static/jquery.js?v=5d32c60e"></script>
+        <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+        <script src="_static/documentation_options.js?v=5929fcd5"></script>
+        <script src="_static/doctools.js?v=888ff710"></script>
+        <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
+    <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-
 
 
-            <a href="index.html" class="icon icon-home"> Programming Bootcamp 2024
-
-
 
+          <a href="index.html" class="icon icon-home">
+            Programming Bootcamp 2024
           </a>
-
-
-
-
-
-
-
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" />
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
     <input type="hidden" name="check_keywords" value="yes" />
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="source/syllabus.html">Syllabus</a></li>
+<li class="toctree-l1"><a class="reference internal" href="source/setupInstructions.html">Setup Instructions</a></li>
+<li class="toctree-l1"><a class="reference internal" href="source/lecture_videos.html">Self-Study Videos</a></li>
 <li class="toctree-l1"><a class="reference internal" href="source/git.html">Git</a></li>
 <li class="toctree-l1"><a class="reference internal" href="source/emacs.html">Emacs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="source/cmake.html">Cmake</a></li>
@@ -99,114 +57,57 @@
 <li class="toctree-l1"><a class="reference internal" href="source/resources.html">Additional Resources</a></li>
 </ul>
 
-
-
         </div>
-
       </div>
     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
-
-      <nav class="wy-nav-top" aria-label="top navigation">
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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-
       </nav>
 
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       <div class="wy-nav-content">
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         <div class="rst-content">
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-
-      <li><a href="index.html" class="icon icon-home"></a> &raquo;</li>
-
-      <li>&lt;no title&gt;</li>
-
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+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">&lt;no title&gt;</li>
       <li class="wy-breadcrumbs-aside">
-
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             <a href="_sources/.special.rst.txt" rel="nofollow"> View page source</a>
-
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-
+             
 
 
            </div>
-
           </div>
           <footer>
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        &#169; Copyright 2020-2024, Peter Mackenzie-Helnwein, Frank McKenna.
-
-    </p>
+    <p>&#169; Copyright 2020-2024, Peter Mackenzie-Helnwein, Frank McKenna.</p>
   </div>
-
-
-
-    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
     <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
 
 </footer>
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+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
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+  </script> 
 
 </body>
 </html>
diff --git a/docs/_sources/.special.rst.txt b/docs/_sources/.special.rst.txt
@@ -0,0 +1,42 @@
+.. Color profiles for Sphinx.
+.. Has to be used with hacks.css (bitbucket.org/lbesson/web-sphinx/src/master/.static/hacks.css)
+.. role:: black
+.. role:: gray
+.. role:: grey
+.. role:: silver
+.. role:: white
+.. role:: maroon
+.. role:: red
+.. role:: magenta
+.. role:: fuchsia
+.. role:: pink
+.. role:: orange
+.. role:: yellow
+.. role:: lime
+.. role:: green
+.. role:: olive
+.. role:: teal
+.. role:: cyan
+.. role:: aqua
+.. role:: blue
+.. role:: navy
+.. role:: purple
+
+.. role:: under
+.. role:: over
+.. role:: blink
+.. role:: line
+.. role:: strike
+
+.. role:: it
+.. role:: ob
+
+.. role:: small
+.. role:: large
+
+.. role:: center
+.. role:: left
+.. role:: right
+
+
+.. (c) Lilian Besson, 2011-2016, https://bitbucket.org/lbesson/web-sphinx/
diff --git a/docs/_sources/index.rst.txt b/docs/_sources/index.rst.txt
@@ -3,19 +3,21 @@ Welcome to the NHERI-SimCenter 2024 Programming Bootcamp
 
 Following the success of our online version of this workshop,
 this year's **offering will be solely online**.  Expect to collaborate with 
-students from across the globe and enjoy the oportunity to make new friends
+students from across the globe and enjoy the opportunity to make new friends
 at unexpected places.
 
-**The format** of the course this year has changed. This year the workshop is a **one week** intensive
-course of online instruction. The course is split evenly into ***Python** and **C/C++**. The particpants
-will be asked to review material before the workshop. Each day the material presented in those videos will 
-be reviewed **briefly** before example progams are developed from scratch.
+**The format** of the course this year **has changed** from previous offerings.
+This year, the workshop is a **one week** intensive course of online instruction.
+The course is split evenly into **Python** (M-T-W) and **C/C++** (W-Th-F).
+The participants
+will be asked to review video material before the workshop.
+Each day, the material presented in those videos will
+be reviewed **briefly** before example programs are developed from scratch.
 
-Every morning, office hours are held for one (1) hour before the days presentations begin..
 
 .. note::
 
-   It is **intense**. While instruction is limited to a few hours a day, expect to spend significant hours daily working and submitting assignments if you intend to get anything worthwhile from the courses.
+   It is **intense**. While instruction is limited to six hours a day, expect to spend a few extra hours daily working on assignments if you intend to get anything worthwhile from the courses.
 
 
 
@@ -27,7 +29,7 @@ The outline of the  workshop is follows.
 
    The first part of the Python training is geared towards beginner and intermediate level material.
    In it we will cover the basic concepts of python, as well as fundamentals of code design.
-   It will utilize Python notebooks to acheive this. In the latter part of the workshop we will transition you
+   It will utilize Python notebooks to achieve this. In the latter part of the workshop we will transition you
    to the command-line use of python. In it we will cover creating a modular python program, utilizing for example development
    environments and file editors, things you'll need working on any high-performance computing (HPC) environment. 
 

diff --git a/docs/_sources/source/lecture_videos_part0.rst.txt b/docs/_sources/source/lecture_videos_part0.rst.txt
@@ -1,9 +1,9 @@
 
 General Topics
-==========
+===============
 
 Setup
------
+------
 
 * for Windows