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clarify readmes & break down into more specific readme for each section
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TeaganKing committed Sep 20, 2023
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26 changes: 7 additions & 19 deletions README.md
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- Click on the `notebooks` directory
- Click on the `Day0a_GitStarted.ipynb` notebook in the sidebar of your JupyterLab window.

## Notebook Table of Contents
- GettingStarted: These notebooks are the building blocks for all additional notebooks.
- 1_NEON_Simulation_Tutorial.ipynb : This notebook shows how to run a NEON simulation
- 2_NEON_Simulation_Visualization.ipynb : This notebook shows how to visualize NEON simulation output
- ProjectExamples: These notebooks are project-specific and build upon the GettingStarted notebooks
- Basic_CTSM-NEON_Plots.ipynb : This notebook shows how to create plots from NEON data, as well as perform time averaging, etc
- CTSMsp_NEON_fromScratch.ipynb : This notebook focuses on using CTSM with satellite phenology
- Clone_Case.ipynb : This notebook shares how to clone a case
- FATES_NEON_fromScratch.ipynb : This notebook works on creating a FATES case from scratch with NEON
- Plot_flux_climatology.ipynb : This notebook provides climatology plotting examples
- QuickPlot_CTSM-FATESsp.ipynb : This notebook provides plotting tools for use with FATES run with satellite phenology
- QuickPlot_CTSM_h0.ipynb : This plots monthly CTSM data
- QuickPlot_CTSM_spinup.ipynb : This plots CTSM cases that have been spun up
- customizeCase_PRISM.ipynb : This customizes a case to use PRISM precipitation input data
- customizeCase_modelFeatures.ipynb : This customizes various model features
- customizeCase_parameterModifications.ipynb : This notebook provides tools for parameter modifications and takes input that is generated from modifyParameterFile.ipynb
- modifyParameterFile.ipynb : This notebook modifies a parameter file that can then be used by customizeCase_parameterModifications.ipynb
- modifySurfdataFile.ipynb : This notebook modifies a surface data file that can then be used by customizeCase_modelFeatures.ipynb
- ContributedNotebooks: These notebooks are contributed by workshop participants who dove further into a particular project.
## Notebook Table of Contents (Note: see individual section README.md files for more details on each section)
- Global: These tutorials focus on cases that are run globally.
- SinglePoint: These tutorials focus on cases that are run at a single point.
- GettingStarted: These notebooks are the building blocks for all additional notebooks.
- BuildingBlocks: These notebooks are intended as tools that you can add to your toolbox to better understand details from ProjectExamples.
- ProjectExamples: These notebooks are project-specific and build upon the GettingStarted notebooks
- ContributedNotebooks: These notebooks are contributed by workshop participants who dove further into a particular project.

## 📚 Resources

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Use the notebooks in this section to run a global case.
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These tutorials are intended to be used to support users in having additional tools in their toolbox that will contribute to larger projects such as those in ProjectExamples.
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These notebooks are the building blocks for all additional notebooks.
- 1_NEON_Simulation_Tutorial.ipynb : This notebook shows how to run a NEON simulation
- 2_NEON_Simulation_Visualization.ipynb : This notebook shows how to visualize NEON simulation output
14 changes: 14 additions & 0 deletions notebooks/SinglePoint/ProjectExamples/README.md
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These notebooks are project-specific and build upon the GettingStarted notebooks. They reference skills learned through the BuildingBlocks Notebooks.
- Basic_CTSM-NEON_Plots.ipynb : This notebook shows how to create plots from NEON data, as well as perform time averaging, etc
- CTSMsp_NEON_fromScratch.ipynb : This notebook focuses on using CTSM with satellite phenology
- Clone_Case.ipynb : This notebook shares how to clone a case
- FATES_NEON_fromScratch.ipynb : This notebook works on creating a FATES case from scratch with NEON
- Plot_flux_climatology.ipynb : This notebook provides climatology plotting examples
- QuickPlot_CTSM-FATESsp.ipynb : This notebook provides plotting tools for use with FATES run with satellite phenology
- QuickPlot_CTSM_h0.ipynb : This plots monthly CTSM data
- QuickPlot_CTSM_spinup.ipynb : This plots CTSM cases that have been spun up
- customizeCase_PRISM.ipynb : This customizes a case to use PRISM precipitation input data
- customizeCase_modelFeatures.ipynb : This customizes various model features
- customizeCase_parameterModifications.ipynb : This notebook provides tools for parameter modifications and takes input that is generated from modifyParameterFile.ipynb
- modifyParameterFile.ipynb : This notebook modifies a parameter file that can then be used by customizeCase_parameterModifications.ipynb
- modifySurfdataFile.ipynb : This notebook modifies a surface data file that can then be used by customizeCase_modelFeatures.ipynb

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