Procedural scheduling migration fix patch #1088

Workflow file for this run

	name: Database Migrations Check PR

	on:
	pull_request:
	paths:
	- "deployment/hasura/migrations/**"
	- "deployment/postgres-init-db/sql/**"
	- ".github/workflows/pgcmp.yml"
	- ".github/workflows/scripts/compareDatabases*"
	push:
	paths:
	- "deployment/hasura/migrations/**"
	- "deployment/postgres-init-db/sql/**"
	- ".github/workflows/pgcmp.yml"
	- ".github/workflows/scripts/compareDatabases*"
	branches:
	- develop
	- dev-[0-9]+.[0-9]+.[0-9]+
	tags:
	- v*
	workflow_dispatch:

	env:
	AERIE_USERNAME: "${{secrets.AERIE_USERNAME}}"
	AERIE_PASSWORD: "${{secrets.AERIE_PASSWORD}}"
	HASURA_GRAPHQL_ADMIN_SECRET: "${{secrets.HASURA_GRAPHQL_ADMIN_SECRET}}"
	HASURA_GRAPHQL_JWT_SECRET: "${{secrets.HASURA_GRAPHQL_JWT_SECRET}}"
	POSTGRES_USER: "${{secrets.POSTGRES_USER}}"
	POSTGRES_PASSWORD: "${{secrets.POSTGRES_PASSWORD}}"
	GATEWAY_USERNAME: "${{secrets.GATEWAY_USERNAME}}"
	GATEWAY_PASSWORD: "${{secrets.GATEWAY_PASSWORD}}"
	MERLIN_USERNAME: "${{secrets.MERLIN_USERNAME}}"
	MERLIN_PASSWORD: "${{secrets.MERLIN_PASSWORD}}"
	SCHEDULER_USERNAME: "${{secrets.SCHEDULER_USERNAME}}"
	SCHEDULER_PASSWORD: "${{secrets.SCHEDULER_PASSWORD}}"
	SEQUENCING_USERNAME: "${{secrets.SEQUENCING_USERNAME}}"
	SEQUENCING_PASSWORD: "${{secrets.SEQUENCING_PASSWORD}}"

	jobs:
	dump-db-base:
	runs-on: ubuntu-latest
	environment: e2e-test
	steps:
	- name: Checkout v2.8.0
	uses: actions/checkout@v4
	with:
	ref: "v2.8.0"
	- name: Clone PGCMP
	uses: actions/checkout@v4
	with:
	repository: NASA-AMMOS/pgcmp
	path: pgcmp
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"
	- name: Setup Postgres Client (psql)
	# ubuntu-latest does not currently have psql-16 in its apt library, so we cannot just run
	# sudo apt update && sudo apt-get install --yes postgresql-client-16
	# Current instructions are from https://www.postgresql.org/download/linux/ubuntu/
	run: \|
	sudo apt update
	sudo apt install curl ca-certificates
	sudo install -d /usr/share/postgresql-common/pgdg
	sudo curl -o /usr/share/postgresql-common/pgdg/apt.postgresql.org.asc --fail https://www.postgresql.org/media/keys/ACCC4CF8.asc
	sudo sh -c 'echo "deb [signed-by=/usr/share/postgresql-common/pgdg/apt.postgresql.org.asc] https://apt.postgresql.org/pub/repos/apt $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list'
	sudo apt update
	sudo apt -y install postgresql-client-16
	- name: Setup Hasura CLI
	run: sudo curl -L https://github.com/hasura/graphql-engine/raw/stable/cli/get.sh \| bash
	- name: Start Postgres
	run: \|
	sed -i 's/postgres:14.8/postgres:16.4/' docker-compose.yml
	docker compose up -d postgres hasura
	docker images
	docker ps -a
	- name: Sleep for 1 Minute
	run: sleep 60s
	shell: bash
	- name: Dump v2.8.0 Database
	run: \|
	mkdir pgdumpV2_8_0
	PGURI=postgres://"${AERIE_USERNAME}":"${AERIE_PASSWORD}"@localhost:5432/aerie \
	PGCMPOUTPUT=./pgdumpV2_8_0/AerieV2_8_0 \
	PGCLABEL=AerieV2_8_0 \
	PGBINDIR=/usr/bin \
	./pgcmp/pgcmp-dump
	shell: bash
	- name: Share Database Dump
	uses: actions/upload-artifact@v4
	with:
	name: v2_8_0-db-dump
	path: pgdumpV2_8_0
	retention-days: 1
	- name: Checkout Latest
	uses: actions/checkout@v4
	- name: Restart Hasura
	run: \|
	docker compose down
	docker compose up -d postgres hasura
	docker images
	docker ps -a
	- name: Sleep for 30 seconds
	run: sleep 30s
	shell: bash
	- name: Migrate Base to Latest
	run: \|
	cd deployment
	cat << EOF > .env
	AERIE_USERNAME=${AERIE_USERNAME}
	AERIE_PASSWORD=${AERIE_PASSWORD}
	EOF
	python -m pip install -r requirements.txt
	python aerie_db_migration.py --apply --all
	cd ..
	- name: Clone PGCMP
	uses: actions/checkout@v4
	with:
	repository: NASA-AMMOS/pgcmp
	path: pgcmp
	- name: Dump Migrated Database
	run: \|
	mkdir pgdumpmigrated
	PGURI=postgres://"${AERIE_USERNAME}":"${AERIE_PASSWORD}"@localhost:5432/aerie \
	PGCMPOUTPUT=./pgdumpmigrated/AerieMigratedUp \
	PGCLABEL=AerieMigratedUp \
	PGBINDIR=/usr/bin \
	./pgcmp/pgcmp-dump
	shell: bash
	- name: Share Database Dump
	uses: actions/upload-artifact@v4
	with:
	name: migrated-db-dump
	path: pgdumpmigrated
	retention-days: 1
	- name: Print Logs for Services
	if: success() \|\| failure()
	run: docker compose logs -t
	- name: Stop Postgres and Hasura
	run: \|
	docker ps -a
	docker compose down
	docker ps -a
	- name: Prune Volumes
	run: docker volume prune --force

	dump-current:
	runs-on: ubuntu-latest
	environment: e2e-test
	steps:
	- name: Checkout Repo
	uses: actions/checkout@v4
	- name: Setup Postgres Client (psql)
	# ubuntu-latest does not currently have psql-16 in its apt library, so we cannot just run
	# sudo apt update && sudo apt-get install --yes postgresql-client-16
	# Current instructions are from https://www.postgresql.org/download/linux/ubuntu/
	run: \|
	sudo apt update
	sudo apt install curl ca-certificates
	sudo install -d /usr/share/postgresql-common/pgdg
	sudo curl -o /usr/share/postgresql-common/pgdg/apt.postgresql.org.asc --fail https://www.postgresql.org/media/keys/ACCC4CF8.asc
	sudo sh -c 'echo "deb [signed-by=/usr/share/postgresql-common/pgdg/apt.postgresql.org.asc] https://apt.postgresql.org/pub/repos/apt $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list'
	sudo apt update
	sudo apt -y install postgresql-client-16
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"
	- name: Setup Hasura CLI
	run: sudo curl -L https://github.com/hasura/graphql-engine/raw/stable/cli/get.sh \| bash
	- name: Start Postgres and Hasura
	run: \|
	docker compose up -d postgres hasura
	docker images
	docker ps -a
	- name: Sleep for 1 Minute
	run: sleep 60s
	shell: bash
	- name: Clone PGCMP
	uses: actions/checkout@v4
	with:
	repository: NASA-AMMOS/pgcmp
	path: pgcmp
	- name: Dump Current Database
	run: \|
	mkdir pgdumpcurrent
	PGURI=postgres://"${AERIE_USERNAME}":"${AERIE_PASSWORD}"@localhost:5432/aerie \
	PGCMPOUTPUT=./pgdumpcurrent/AerieCurrent \
	PGCLABEL=AerieCurrent \
	PGBINDIR=/usr/bin \
	./pgcmp/pgcmp-dump
	shell: bash
	- name: Share Database Dump
	uses: actions/upload-artifact@v4
	with:
	name: current-sql-db-dump
	path: pgdumpcurrent
	retention-days: 1
	- name: Migrate Latest to Base
	run: \|
	cd deployment
	cat << EOF > .env
	AERIE_USERNAME=${AERIE_USERNAME}
	AERIE_PASSWORD=${AERIE_PASSWORD}
	EOF
	python -m pip install -r requirements.txt
	python aerie_db_migration.py --revert --all
	cd ..
	- name: Dump Migrated Database
	run: \|
	mkdir pgdumpmigrateddown
	PGURI=postgres://"${AERIE_USERNAME}":"${AERIE_PASSWORD}"@localhost:5432/aerie \
	PGCMPOUTPUT=./pgdumpmigrateddown/AerieMigratedDown \
	PGCLABEL=AerieMigratedDown \
	PGBINDIR=/usr/bin \
	./pgcmp/pgcmp-dump
	shell: bash
	- name: Share Database Dump
	uses: actions/upload-artifact@v4
	with:
	name: migrated-down-db-dump
	path: pgdumpmigrateddown
	retention-days: 1
	- name: Print Logs for Services
	run: docker compose logs -t
	- name: Stop Postgres and Hasura
	run: \|
	docker ps -a
	docker compose down
	docker ps -a
	- name: Prune Volumes
	run: docker volume prune --force

	pgcmp-up:
	needs: [dump-db-base, dump-current]
	runs-on: ubuntu-latest
	steps:
	- name: Checkout Repo
	uses: actions/checkout@v4
	- name: Clone PGCMP
	uses: actions/checkout@v4
	with:
	repository: NASA-AMMOS/pgcmp
	path: pgcmp
	- name: Setup Postgres Client (psql)
	# ubuntu-latest does not currently have psql-16 in its apt library, so we cannot just run
	# sudo apt update && sudo apt-get install --yes postgresql-client-16
	# Current instructions are from https://www.postgresql.org/download/linux/ubuntu/
	run: \|
	sudo apt update
	sudo apt install curl ca-certificates
	sudo install -d /usr/share/postgresql-common/pgdg
	sudo curl -o /usr/share/postgresql-common/pgdg/apt.postgresql.org.asc --fail https://www.postgresql.org/media/keys/ACCC4CF8.asc
	sudo sh -c 'echo "deb [signed-by=/usr/share/postgresql-common/pgdg/apt.postgresql.org.asc] https://apt.postgresql.org/pub/repos/apt $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list'
	sudo apt update
	sudo apt -y install postgresql-client-16
	- name: Start Postgres
	run: docker run -d -p 5432:5432 -e POSTGRES_HOST_AUTH_METHOD=trust --name=postgres postgres:16.4
	- name: Sleep for 5 Seconds
	run: sleep 5s
	shell: bash
	- name: Download Shared Dumps
	uses: actions/download-artifact@v4
	with:
	name: migrated-db-dump
	path: pgcmp/pgdumpmigrated
	- uses: actions/download-artifact@v4
	with:
	name: current-sql-db-dump
	path: pgcmp/pgdumpcurrent
	- name: Compare Databases
	id: dbcmp
	run: \|
	cp ./.github/scripts/explanations_up pgcmp/explanations
	cp ./.github/scripts/compareDatabasesUp.sh pgcmp/compareDatabases.sh
	cd pgcmp
	./compareDatabases.sh
	shell: bash
	- name: Upload Invalid
	if: ${{ failure() && steps.dbcmp.conclusion == 'failure' }}
	uses: actions/upload-artifact@v4
	with:
	name: pgcmpresultsup
	path: "**/results/"
	- name: Print Logs for Services
	if: always()
	run: docker logs -t postgres
	- name: Stop Postgres
	run: \|
	docker ps -a
	docker stop postgres
	docker ps -a
	- name: Prune Volumes
	run: docker volume prune --force

	pgcmp-down:
	needs: [dump-db-base, dump-current]
	runs-on: ubuntu-latest
	steps:
	- name: Checkout Repo
	uses: actions/checkout@v4
	- name: Clone PGCMP
	uses: actions/checkout@v4
	with:
	repository: NASA-AMMOS/pgcmp
	path: pgcmp
	- name: Setup Postgres Client (psql)
	# ubuntu-latest does not currently have psql-16 in its apt library, so we cannot just run
	# sudo apt update && sudo apt-get install --yes postgresql-client-16
	# Current instructions are from https://www.postgresql.org/download/linux/ubuntu/
	run: \|
	sudo apt update
	sudo apt install curl ca-certificates
	sudo install -d /usr/share/postgresql-common/pgdg
	sudo curl -o /usr/share/postgresql-common/pgdg/apt.postgresql.org.asc --fail https://www.postgresql.org/media/keys/ACCC4CF8.asc
	sudo sh -c 'echo "deb [signed-by=/usr/share/postgresql-common/pgdg/apt.postgresql.org.asc] https://apt.postgresql.org/pub/repos/apt $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list'
	sudo apt update
	sudo apt -y install postgresql-client-16
	- name: Start Postgres
	run: docker run -d -p 5432:5432 -e POSTGRES_HOST_AUTH_METHOD=trust --name=postgres postgres:16.4
	- name: Sleep for 5 Seconds
	run: sleep 5s
	shell: bash
	- name: Download Shared Dumps
	uses: actions/download-artifact@v4
	with:
	name: v2_8_0-db-dump
	path: pgcmp/pgdumpV2_8_0
	- uses: actions/download-artifact@v4
	with:
	name: migrated-down-db-dump
	path: pgcmp/pgdumpmigrateddown
	- name: Compare Databases
	id: dbcmp
	run: \|
	cp ./.github/scripts/explanations_down pgcmp/explanations
	cp ./.github/scripts/compareDatabasesDown.sh pgcmp/compareDatabases.sh
	cd pgcmp
	./compareDatabases.sh
	shell: bash
	- name: Upload Invalid
	if: ${{ failure() && steps.dbcmp.conclusion == 'failure' }}
	uses: actions/upload-artifact@v4
	with:
	name: pgcmpresultsdown
	path: "**/results/"
	- name: Print Logs for Services
	if: always()
	run: docker logs -t postgres
	- name: Stop Postgres
	run: \|
	docker ps -a
	docker stop postgres
	docker ps -a
	- name: Prune Volumes
	run: docker volume prune --force

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Procedural scheduling migration fix patch #1088

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Procedural scheduling migration fix patch #1088

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