Content onboarding scripts #26
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childers
approved these changes
Oct 21, 2019
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| #Add tools to PATH | ||
| export PATH=$PATH:/home/vagrant/wiggle-tools:/home/vagrant/bam_to_bigwig:/home/vagrant/content_onboarding_scripts/bin:/home/vagrant/jbrowse/bin | ||
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This only sets $PATH for the active session. Once we reset the session, this $PATH is lost.
Vagrantfile
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| mkdir -p /app/data/tools | ||
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| #Add tools to PATH | ||
| export PATH=$PATH:/home/vagrant/wiggle-tools:/home/vagrant/bam_to_bigwig:/home/vagrant/content_onboarding_scripts/bin:/home/vagrant/jbrowse/bin |
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Change this to:
sed 's/PATH=/PATH=/home/vagrant/wiggle-tools:/home/vagrant/bam_to_bigwig:/home/vagrant/content_onboarding_scripts/bin:/home/vagrant/jbrowse/bin:/g' .bash_profile >.bash_profile
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This PR (if it works) should resolve: