Small bugfixes and enhancements:
- Adding option
--autotrim_only
, which allows the use of ShortStack's automated adapter finding and trimming on sRNA-seq datasets without any other downstream analyses. - Fixed Issue #162 , a rare bug where ShortStack was giving some bad microRNA annotations.
- Fixed Issue #160 , a bug where the
--known_miRNAs.gff3
output file was not being displayed correctly on the IGV genome browser.