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Version 4.1.0
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@MikeAxtell MikeAxtell released this 10 Sep 12:25
· 26 commits to master since this release
v4.1.0
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Significant update that includes big fixes and performance improvements. Includes

  • Implementation of condensed reads (see README)
  • Improved reporting of read trimming results (#155)
  • Improved documentation of alignment format in the README (#156)
  • Syntax updates for compatibility with modern Python (#157)
  • Removal of options --show_secondaries and --no_bigwigs
  • New option --make_bigwigs :: creation of bigwig browser tracks is now opt-in instead of opt-out.
  • Strict tests for minimum versions of strucVis and ShortTracks ... required for proper use of "condensed read" alignments.
  • Bioconda recipe updated to include better version control for dependencies.

These updates improve speed by at least 50% and cut file sizes significantly.

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