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Update ci-with-conda.yml
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ASintsova authored Apr 11, 2024
1 parent 5ed238e commit 021bde5
Showing 1 changed file with 2 additions and 14 deletions.
16 changes: 2 additions & 14 deletions .github/workflows/ci-with-conda.yml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: Python Package using Conda
name: Python Package using conda environment

on:
push:
Expand All @@ -17,14 +17,9 @@ jobs:

steps:
- uses: actions/checkout@v3
# - name: Set up Python 3.10
# uses: actions/setup-python@v3
# with:
# python-version: '3.10'
- name: Add conda
uses: conda-incubator/setup-miniconda@v3
with:
#auto-update-conda: true
activate-environment: mbarq
environment-file: mbarq_environment.yaml
python-version: '3.10'
Expand All @@ -33,24 +28,17 @@ jobs:
run: |
conda info
conda list
# run: |
# # $CONDA is an environment variable pointing to the root of the miniconda directory
# echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
- name: Install mbarq
run: |
#conda install -c conda-forge mamba python==3.10
#conda env update --file mbarq_environment.yaml --name base
pip install .
- name: Lint with flake8
run: |
#conda activate mbarq
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
conda activate mbarq
conda install pytest
pytest

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