Batch Submission

Submission to Batch

Submission to the batch system is performed with the script/submit.py:

$python script/submit.py  --help
Usage: submit.py [options]

Options:
  -h, --help            show this help message and exit
  -i INPUT, --input=INPUT
                        Input Configuration file
  -d DIR, --dir=DIR     Directory where to write the configuration. WARNING OVERWRITE THE DIRECTORY!!!
  -v DEBUG, --debug=DEBUG
                        Debug Verbosity. From 0-3. Default=0
  -n NJOBS, --njobs=NJOBS
                        Number of Job to submit
  -q QUEUE, --queue=QUEUE
                        Queue
   [...]

For example:

python script/submit.py -i dat/config.dat -v 3 -n 30 -q 1nh -d mysub/sub1

• You can check the status with the command (after the job started):

python script/submit.py -d mysub/sub1 --status

• you can resubmit jobs i-j,k or the failed job with the commands:

python script/submit.py -d mysub/sub1 --resubmit [ -j fail]
python script/submit.py -d mysub/sub1 --resubmit -j i-j,k
python script/submit.py -d mysub/sub1 --resubmit -j run

• when all jobs finished can be merged with (clear will remove all other files, including debug script and root files):

python scripts/submit.py --hadd [--clear] -d mysub/sub1