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update validation results for SysBioChalmers/Human-GEM
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@mihai-sysbio @github-actions
mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
1 parent 6180cf6 commit ee50c17
Showing 1 changed file with 10 additions and 259 deletions.
269 changes: 10 additions & 259 deletions results/SysBioChalmers_Human-GEM.json
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Original file line number Diff line number Diff line change
Expand Up @@ -4,285 +4,36 @@
"v1.14.0": {
"standard-GEM": [
{
"0.4": true
"0.5": true
},
{
"test_results": {
"cobrapy-load": {
"cobrapy-load-json": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
"errors": "\"[Errno 2] No such file or directory: 'Human-GEM.json'\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.13.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"cobrapy-load-matlab": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"cobrapy-load-sbml": {
"0.26.2": true,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.12.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"cobrapy-load-yaml": {
"0.26.2": true,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.11.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.10.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.9.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.8.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.7.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.6.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.5.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"0.13.0": 0.4740305818784403,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"1.29.0": true,
"errors": []
}
}
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