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@@ -5,3 +5,4 @@ | |
| ^README\.Rmd$ | ||
| ^codecov\.yml$ | ||
| sample* | ||
| ^data-raw$ | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,56 +1,32 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - master | ||
| branches: [main, master] | ||
| tags: ['*'] | ||
|
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| name: pkgdown | ||
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| jobs: | ||
| pkgdown: | ||
| runs-on: ubuntu-18.04 | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
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||
| steps: | ||
| - uses: actions/checkout@v2 | ||
|
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| - uses: r-lib/actions/setup-r@v1 | ||
| id: install-r | ||
|
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| - uses: r-lib/actions/setup-pandoc@v1 | ||
|
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| - name: Install pak and query dependencies | ||
| run: | | ||
| install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | ||
| saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds") | ||
| shell: Rscript {0} | ||
|
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||
| - name: Restore R package cache | ||
| uses: actions/cache@v2 | ||
| - uses: r-lib/actions/setup-r@v1 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} | ||
| restore-keys: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1- | ||
| use-public-rspm: true | ||
|
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| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| run: | | ||
| pak::local_system_requirements(execute = TRUE) | ||
| pak::pkg_system_requirements("pkgdown", execute = TRUE) | ||
| shell: Rscript {0} | ||
|
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| - name: Install dependencies | ||
| run: | | ||
| pak::local_install_dev_deps(upgrade = TRUE) | ||
| pak::pkg_install("pkgdown") | ||
| shell: Rscript {0} | ||
|
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| - name: Install package | ||
| run: R CMD INSTALL . | ||
| - uses: r-lib/actions/setup-r-dependencies@v1 | ||
| with: | ||
| extra-packages: pkgdown | ||
| needs: website | ||
|
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| - name: Build and deploy pkgdown site | ||
| - name: Deploy package | ||
| run: | | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "[email protected]" | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,55 +1,75 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| issue_comment: | ||
| types: [created] | ||
|
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||
| name: Commands | ||
|
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| jobs: | ||
| document: | ||
| if: startsWith(github.event.comment.body, '/document') | ||
| name: document | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
|
|
||
| - uses: r-lib/actions/pr-fetch@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
|
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| - uses: r-lib/actions/setup-r@v1 | ||
| - name: Install dependencies | ||
| run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)' | ||
| with: | ||
| use-public-rspm: true | ||
|
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||
| - uses: r-lib/actions/setup-r-dependencies@v1 | ||
| with: | ||
| extra-packages: roxygen2 | ||
|
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| - name: Document | ||
| run: Rscript -e 'roxygen2::roxygenise()' | ||
|
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| - name: commit | ||
| run: | | ||
| git config --local user.email "[email protected]" | ||
| git config --local user.name "GitHub Actions" | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "[email protected]" | ||
| git add man/\* NAMESPACE | ||
| git commit -m 'Document' | ||
| - uses: r-lib/actions/pr-push@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| style: | ||
| if: startsWith(github.event.comment.body, '/style') | ||
| name: style | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
|
|
||
| - uses: r-lib/actions/pr-fetch@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| - uses: r-lib/actions/setup-r@v1 | ||
|
|
||
| - name: Install dependencies | ||
| run: Rscript -e 'install.packages("styler")' | ||
|
|
||
| - name: Style | ||
| run: Rscript -e 'styler::style_pkg()' | ||
|
|
||
| - name: commit | ||
| run: | | ||
| git config --local user.email "[email protected]" | ||
| git config --local user.name "GitHub Actions" | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "[email protected]" | ||
| git add \*.R | ||
| git commit -m 'Style' | ||
| - uses: r-lib/actions/pr-push@v1 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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|
@@ -2,22 +2,22 @@ Package: tidycmprsk | |
| Title: Tidy Implementation of Competing Risks Regression | ||
| Version: 0.0.0.9000 | ||
| Authors@R: | ||
| person(given = "First", | ||
| family = "Last", | ||
| role = c("aut", "cre"), | ||
| email = "[email protected]", | ||
| person("First", "Last", , "[email protected]", role = c("aut", "cre"), | ||
| comment = c(ORCID = "YOUR-ORCID-ID")) | ||
| Description: What the package does (one paragraph). | ||
| License: AGPL (>= 3) | ||
| Imports: | ||
| cmprsk, | ||
| dplyr, | ||
| dplyr (>= 1.0.3), | ||
| hardhat, | ||
| survival, | ||
| tibble | ||
| Suggests: | ||
| covr, | ||
| gtsummary, | ||
| testthat (>= 3.0.0) | ||
| Config/testthat/edition: 3 | ||
| Encoding: UTF-8 | ||
| LazyData: true | ||
| Roxygen: list(markdown = TRUE) | ||
| RoxygenNote: 7.1.2 | ||
| Suggests: | ||
| covr | ||
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