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Point mutation documenation/function #344

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Point mutation documenation/function #344

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hfuchs5
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@hfuchs5 hfuchs5 commented Jun 6, 2024

What changes are proposed in this pull request?
A new exported helper function which allows users to identify and rename specific point mutations.

If there is an GitHub issue associated with this pull request, please provide link.
#322


Reviewer Checklist (if item does not apply, mark is as complete)

  • PR branch has pulled the most recent updates from main branch. Ensure the pull request branch and your local version match and both have the latest updates from the main branch.
  • If a new function was added, function included in _pkgdown.yml
  • If a bug was fixed, a unit test was added for the bug check
  • Run pkgdown::build_site(). Check the R console for errors, and review the rendered website.
  • Code coverage is suitable for any new functions/features. Review coverage with withr::with_envvar(new = c("NOT_CRAN" = "true"), covr::report()). Begin in a fresh R session without any packages loaded.
  • R CMD Check runs without errors, warnings, and notes
  • usethis::use_spell_check() runs with no spelling errors in documentation

When the branch is ready to be merged into master:

  • Update NEWS.md with the changes from this pull request under the heading "# cbioportalR (development version)". If there is an issue associated with the pull request, reference it in parentheses at the end update (see NEWS.md for examples).
  • Run codemetar::write_codemeta()
  • Run usethis::use_spell_check() again
  • Approve Pull Request
  • Merge the PR

hfuchs5 added 2 commits May 9, 2024 10:46
will need to come back to this because the cbioportal public data access token button is broken
update to include data from MSK IMPACT 2017 as an example
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