Merge pull request #321 from MSKCC-Epi-Bio/add_other_vars_to_sum_by_gene #382
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master, dev] | |
| pull_request: | |
| branches: [main, master, dev] | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| SYNAPSE_USERNAME: ${{ secrets.SYNAPSE_USERNAME }} | |
| SYNAPSE_PASSWORD: ${{ secrets.SYNAPSE_PASSWORD }} | |
| CBIOPORTAL_TOKEN: ${{ secrets.CBIOPORTAL_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: covr | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |