add pkgdown

.Rbuildignore

@@ -1,2 +1,7 @@
 ^genomeverse\.Rproj$
 ^\.Rproj\.user$
+^README\.Rmd$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
+^\.github$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/pkgdown.yaml

@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -1 +1,11 @@
 .Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+.DS_Store
+inst/doc
+docs/
+benchmark/lib
+docs
+/doc/
+/Meta/

DESCRIPTION

@@ -2,9 +2,9 @@ Package: genomeverse
 Title: What the Package Does (One Line, Title Case)
 Version: 0.0.0.9000
 Authors@R: 
-    person("First", "Last", , "first.last@example.com", role = c("aut", "cre"),
-           comment = c(ORCID = "YOUR-ORCID-ID"))
-Description: What the package does (one paragraph).
+    person("Karissa", "Whiting", , "karissa.whiting@gmail.com", role = c("aut", "cre"),
+           comment = c(ORCID = "0000-0002-4683-1868"))
+Description: genomeverse is a collection of R packages that are designed to work together seamlessly to create reproducible clinico-genomic analysis pipelines.
 License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
     license
 Encoding: UTF-8
@@ -18,6 +18,7 @@ Imports:
     oncokbR (>= 0.0.0.9001),
     rstudioapi,
     utils
-Remotes:  
+Remotes: 
     MSKCC-Epi-Bio/gnomeR,
     karissawhiting/oncokbR
+URL: https://mskcc-epi-bio.github.io/genomeverse/

_pkgdown.yml

@@ -0,0 +1,4 @@
+url: https://mskcc-epi-bio.github.io/genomeverse/
+template:
+  bootstrap: 5
+