Merge pull request #4 from MSKCC-Epi-Bio/updating-readme-page

Updating readme page
MSKCC-Epi-Bio · Oct 10, 2024 · 6ccd3f2 · 6ccd3f2
2 parents fa52c49 + dac2d34
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Showing 3 changed files with 7 additions and 6 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -13,6 +13,7 @@ Imports:
     cbioportalR,
     cli,
     crayon,
+    genieBPC,
     gnomeR (>= 1.2.0.9004),
     oncokbR (>= 0.0.0.9001),
     rstudioapi,

diff --git a/README.Rmd b/README.Rmd
@@ -18,7 +18,7 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 <!-- badges: end -->
 
-genomeverse is a collection of R packages that are designed to work together seamlessly to create reproducible clinico-genomic analysis pipelines
+{genomeverse} is a collection of R packages that are designed to work together seamlessly to create reproducible clinico-genomic analysis pipelines.
 
 ## Installation
 
@@ -34,7 +34,7 @@ devtools::install_github("MSKCC-Epi-Bio/genomeverse")
 `library(genomeverse)` will load the core genomeverse packages: 
 
 * [cbioportalR](https://www.karissawhiting.com/cbioportalR/), for pulling data from cBioPortal.
-* [oncokbR](https://www.karissawhiting.com/oncokbR/), for oncoKB annotation fo data.
+* [oncokbR](https://www.karissawhiting.com/oncokbR/), for oncoKB annotation of data.
 * [gnomeR](https://mskcc-epi-bio.github.io/gnomeR/), for processing raw mutation, CNA and fusion files.
 
 You also get a condensed summary of conflicts with other packages you have loaded:

diff --git a/README.md b/README.md
@@ -6,9 +6,9 @@
 <!-- badges: start -->
 <!-- badges: end -->
 
-genomeverse is a collection of R packages that are designed to work
+{genomeverse} is a collection of R packages that are designed to work
 together seamlessly to create reproducible clinico-genomic analysis
-pipelines
+pipelines.
 
 ## Installation
 
@@ -27,7 +27,7 @@ devtools::install_github("MSKCC-Epi-Bio/genomeverse")
 - [cbioportalR](https://www.karissawhiting.com/cbioportalR/), for
   pulling data from cBioPortal.
 - [oncokbR](https://www.karissawhiting.com/oncokbR/), for oncoKB
-  annotation fo data.
+  annotation of data.
 - [gnomeR](https://mskcc-epi-bio.github.io/gnomeR/), for processing raw
   mutation, CNA and fusion files.
 
@@ -36,7 +36,7 @@ have loaded:
 
 ``` r
 library(genomeverse)
-#> ── Attaching packages ──────────────────────────────── genomeverse 0.0.0.9000 ──
+#> ── Attaching packages ──────────────────────────────── genomeverse 0.0.0.9001 ──
 #> ✔ cbioportalR 1.1.0          ✔ oncokbR     0.0.0.9001
 #> ✔ gnomeR      1.2.0.9004
 ```